CF832212

Overview
NameCF832212
Unique NameCF832212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:235..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC8_ARATH (Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = -2
Query:  204 SGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTK-EDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGM 509
            + V  +  N+TV+++LQN   I P   E+HP HLHG +F+VLG G G +    D            NT  + P GW  LRF+A+NPG W FHCH++ H   G+
Sbjct:  441 TSVKKIRFNSTVEIVLQNTAIISP---ESHPMHLHGFNFYVLGYGFGNYDPIRDARKLNLFNPQMHNTVGVPPGGWVVLRFIANNPGVWLFHCHMDAHLPYGI 540          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC9_ORYSJ (Putative laccase-9 OS=Oryza sativa subsp. japonica GN=LAC9 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 56/165 (33.94%), Postives = 75/165 (45.45%), Query Frame = -2
Query:  195 AINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDV-MKPPVNAN-----TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 668
            ++NNVS   P    L +  Y       +    E+F N+    + PPVN       T  G+ V +L   T V+V+  + +      SE HP HLHG  F+V+GRG G F +  +              V  P  GW A+RF ADNPG W  HCH + H   GM  V
Sbjct:  402 SLNNVSFQSPAIDVLDAYYYSSGHGVYE----EDFPNKPTAFVDPPVNNGSGPLMTKRGTKVKVLEYGTVVEVVFHDLS------SENHPMHLHGFAFYVVGRGNGTFDESRDPATYNLVDPPFQNTVSVPRSGWAAIRFRADNPGVWFMHCHFDRHVVWGMDTV 556          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC17_ORYSJ (Putative laccase-17 OS=Oryza sativa subsp. japonica GN=LAC17 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 54/162 (33.33%), Postives = 72/162 (44.44%), Query Frame = -2
Query:  198 AINNVSLNLPP-TPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNA---NTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGV 668
            +INNVS  LP  T  L +  +G          P N   ++D     V+        G+ VY L   + V V+LQ  N       E HP HLHG+DF++L  G G F    +              V  P  GW  +RFVADNPG W  HCH++ H   G+ +
Sbjct:  385 SINNVSFVLPSSTSILQAHHHGAPGGVFTADFPANPPVQFDYTAQNVSRALWQPVAGTKVYKLKYGSAVQVVLQGTNIFA---GENHPIHLHGYDFYILAEGLGNFDAGADTGKFNVEDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 543          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC6_ORYSJ (Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 55/166 (33.13%), Postives = 81/166 (48.80%), Query Frame = -2
Query:  195 INNVSLNLPPTPYLGSIKYG-------LKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKE--DEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 665
            +NNVS  LP T  +    Y         +D  DQ     ++++   +   P+ +  +  + V  L  N TV+++LQN   +     E+HP HLHG +F+V+ +G G    E               NT  +   GW  +RFVADNPG WA HCHI+ HF IG+ +V
Sbjct:  395 MNNVSFALPNTVSMLEALYRNTADGVYTRDFPDQPPVAFDYTSRGLLGNSPLASTGSPSTKVKTLRYNATVEMVLQNTALVG---LESHPMHLHGFNFFVVAQGFGNNDGEAAGAGEFNLVNPQERNTVAVPTGGWAVIRFVADNPGMWAMHCHIDSHFAIGLAMV 557          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC23_ORYSJ (Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC23 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 54/170 (31.76%), Postives = 73/170 (42.94%), Query Frame = -2
Query:  198 AINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTL------------GSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGV 668
            +INNVS  LP +         +  A     P   F+ ++    PPV  + T             G+ VY L   + V V+LQ  N       E HP HLHG+DF++L  G G F    +              V  P  GW  +RFVADNPG W  HCH++ H   G+ +
Sbjct:  385 SINNVSFVLPSST-------SILQAHHHGAPGGVFTADFPA-SPPVQFDYTAQNVSRALWQPVPGTKVYKLKYGSAVQVVLQGTNIFA---GENHPIHLHGYDFYILAEGLGNFDAGADTAKFNMEDPPMRNTVGVPVNGWAVIRFVADNPGVWLMHCHLDVHITWGLAM 543          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC1_ORYSJ (Putative laccase-1 OS=Oryza sativa subsp. japonica GN=LAC1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 55/163 (33.74%), Postives = 74/163 (45.40%), Query Frame = -2
Query:  204 AINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPP---VNAN----TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGM 668
            ++NNVS   P    L +  YG      +    ENF N+  V+  P   +N      T  G+ V +L   T V+V+ Q+ +       E HP HLHG  F+V+GRG G F +  +              V  P   W A+RF ADNPG W  HCH + H   GM
Sbjct:  399 SLNNVSFQNPAIDVLDAYYYGSGRGVYE----ENFPNKLTVIVNPTGDINGGGPLLTKRGTKVKVLEYGTVVEVVFQDLSI------ENHPMHLHGFTFYVVGRGSGTFDERRDPATYNLIDPPFQNTVSVPKSSWAAIRFRADNPGVWFMHCHFDRHVVWGM 551          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSJ (Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15
Identity = 60/202 (29.70%), Postives = 94/202 (46.53%), Query Frame = -2
Query:  147 RLTLLNTQNTINGFTKWAINNVSLNLPPTP------YLGSIKYGLKDAFDQNGP-PENFSNEYDVMKPPVNA---NTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 719
            R T    Q ++       +NNVS   P T       Y G+ +    + F    P P N++N   +   P+      T   + +     NT+V++I Q++  +   +S+++P HLHG+D ++L +G G F  + +              ++ P G W A+RF+ DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  372 RNTTCKRQRSLETIEVATMNNVSFTHPNTTALLERYYDGTPEGVYTEDFPVRPPRPYNYTNPALIPPGPLEEVLEPTFKATKLKRFKYNTSVEIIFQSSTLL---MSDSNPMHLHGYDVFLLAQGLGSFNAKRDIRKFNYHNPQLRNTILVPRGGWAAVRFITDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 567          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC8_ORYSJ (Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 41/129 (31.78%), Postives = 65/129 (50.39%), Query Frame = -2
Query:  195 GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 581
            G P  +S ++    PP+       + V  +  N  V+V+LQ+        +E HP HLHG DF++L +G G+F    +           NT  +   GW  +RF+A+NPG W  HCH++ H  +G+ +V
Sbjct:  403 GVPGVYSEDFPDFPPPMQGFRK-ATAVKKVKYNDVVEVVLQSEQYSSTLGTENHPIHLHGFDFYLLAQGLGRFNPSMKSKYNLVDPQVRNTVAVPAGGWAVIRFMANNPGMWFMHCHLDAHLPLGLAMV 530          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSI (Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 57/184 (30.98%), Postives = 89/184 (48.37%), Query Frame = -2
Query:  147 INNVSLNLPPTP------YLGSIKYGLKDAFDQNGP-PENFSNEYDVMKPPVNA---NTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 665
            +NNVS   P T       Y G+ +    + F    P P N++N   +   P+      T   + +     NT+V++I Q++  +   +S+++P HLHG+D ++L +G G F  + +              ++ P G W A+RF+ DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  390 MNNVSFTHPYTTALLERYYDGTPEGVYTEDFPVRPPRPYNYTNPALIPPGPLEEVLEPTFKATKLKRFKYNTSVEIIFQSSTLL---MSDSNPMHLHGYDVFLLAQGLGSFNAKRDIRKFNYHNPQLRNTILVPRGGWAAVRFITDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 567          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC16_ORYSJ (Putative laccase-16 OS=Oryza sativa subsp. japonica GN=LAC16 PE=5 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 52/166 (31.33%), Postives = 75/166 (45.18%), Query Frame = -2
Query:  195 AINNVSLNLPPTPYLGSIKYGL-KDAFDQNGPPENFSNEYDVMKPPVNAN------TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVV 668
            ++NNVS   P    L +  YG  +  ++++ P    +   +    P   N      T  G+ V ++   T V+V+ Q+ +      SE HP HLHG  F+V+GRG G F +  +              V  P   W A+RF ADNPG W  HCH + H   GM  V
Sbjct:  289 SLNNVSFESPAIDVLDAYYYGSGRGVYEEDFP----NKPVNAFVNPTGDNGGRPLLTKRGTKVKVVEYGTVVEVVFQDLS------SENHPMHLHGFAFYVVGRGSGTFDERRDPATYNLVDPPFQNTVSVPKSSWAAIRFRADNPGVWFMHCHFDRHVVWGMDTV 444          
The following BLAST results are available for this feature:
BLAST of CF832212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
LAC8_ARATH3.407e-1640.78Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=... [more]
LAC9_ORYSJ4.450e-1633.94Putative laccase-9 OS=Oryza sativa subsp. japonica... [more]
LAC17_ORYSJ4.450e-1633.33Putative laccase-17 OS=Oryza sativa subsp. japonic... [more]
LAC6_ORYSJ7.591e-1633.13Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 ... [more]
LAC23_ORYSJ9.914e-1631.76Laccase-23 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC1_ORYSJ9.914e-1633.74Putative laccase-1 OS=Oryza sativa subsp. japonica... [more]
LAC20_ORYSJ1.691e-1529.70Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC8_ORYSJ2.885e-1531.78Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 ... [more]
LAC20_ORYSI6.426e-1530.98Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 ... [more]
LAC16_ORYSJ6.426e-1531.33Putative laccase-16 OS=Oryza sativa subsp. japonic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01H24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832212 ID=CF832212; Name=CF832212; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTTTTTTATTCACTCCGAAATTTTATTAATATTAATACCTTTAC
AACAATAGAAACTCCAGGAATAAAGTACATAAAACCCTCTAGCTAGCCTC
AATTTTGTTTAGGGTTCATGAACCTTTTCCCAGTCAAACCACAAGCCAAC
GCCTGGTTTGGAATATTACCAACGGTTTCAACACCAAGAGCAAGAACCAC
ACCCATTCCAATATGGAAATGGGGCTCAATATGGCAGTGAAATGCCCAAG
CACCTGGATTATCAGCAACAAATCTTAAAGCAGTCCAGCCATATGGGAAT
ATCACCGCAGTATTTTTCAATGGTGGATTCTTCAAGTTAAATTTCTTCTC
ATCTTCTTTCGTAAACTTCCCTTCTCCGCGCCCTAATACCCAAAAATCAT
GCCCATGCAAATGCCAAGGGTGGGTTTCACTCAAGTTTGGCCTTATCGCG
TTTGCATTTTGAAGTATAACATCAACTGTGGTGTTTAAACCAAGCATGTA
AACCCCACTTCCAAGAGTTGTATTAGCGTTTACAGGAGGTTTCATCACGT
CATACTCATTCGAGAAGTTTTCGGGGGGACCATTCTGATCAAAAGCATCT
TTAAGACCATATTTGATGGATCCTAAGTAAGGAGTGGGGGGTAAATTCAG
GGACACATTGTTAATAGCCCACTTAGTGAACCCGTTAATGGTGTTTTGAG
TGTTAAGAAGGGTGAGCCGACGGTGGAAATTTGTGGGAGGCTTGGGGGAT
CCCATT
back to top