CF832212

Overview
NameCF832212
Unique NameCF832212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:235..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSJ (Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC19 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.393e-15
Identity = 62/184 (33.70%), Postives = 88/184 (47.83%), Query Frame = -2
Query:  147 INNVSLNLPPTP------YLGSIKYGLKDAFDQNGP-PENFSNEYDVMKPPVNAN---TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 665
            +NNVS   P T       Y G+ K    + F    P P N++N   +   P+      T   + +     NT+V++I Q+   ++   S+++P HLHG+D ++L +G G F  K D            NT  +   GW A+RFV DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  395 MNNVSFAHPKTTALLERYYDGTSKGVYTEDFPIRPPRPFNYTNRDLIPPGPLEEALEPTFKATKLKRFKYNTSVEIIFQSTTLMQ---SDSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 572          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSI (Putative laccase-19 OS=Oryza sativa subsp. indica GN=LAC19 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.393e-15
Identity = 62/184 (33.70%), Postives = 88/184 (47.83%), Query Frame = -2
Query:  147 INNVSLNLPPTP------YLGSIKYGLKDAFDQNGP-PENFSNEYDVMKPPVNAN---TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 665
            +NNVS   P T       Y G+ K    + F    P P N++N   +   P+      T   + +     NT+V++I Q+   ++   S+++P HLHG+D ++L +G G F  K D            NT  +   GW A+RFV DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  395 MNNVSFAHPKTTALLERYYDGTSKGVYTEDFPIRPPRPFNYTNRDLIPPGPLEEALEPTFKATKLKRFKYNTSVEIIFQSTTLMQ---SDSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 572          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC15_ORYSJ (Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC15 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = -2
Query:  195 TVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF-TKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 479
            TVDV+ Q+   ++    +++P HLHGHD ++L +G G +    DE           NT ++   GW A+RFVADNPGAW  HCH E H  +GM  V
Sbjct:  487 TVDVVFQSTAMLQ---GDSNPMHLHGHDVFLLAQGIGIYDAARDEGKFNLVNPPRKNTVLVPNLGWAAVRFVADNPGAWLMHCHFEFHLSMGMAAV 579          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC15_ARATH (Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.105e-14
Identity = 54/180 (30.00%), Postives = 81/180 (45.00%), Query Frame = -2
Query:  147 AINNVSLNLPP-TPYLGSIKYGLKDAFDQNGP--PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF--TKEDEXXXXXXXXXXXNTAVIFPY-GWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 668
            ++NN+S   P     L +  Y +K  +    P  P    N     +P       L + V ++     V++++Q  + +   L   HP HLHG  F+V+G G G +  ++ED               +  P  GW A+RFVADNPG W  HCH++ H   GM VV    +   G  PNQ +
Sbjct:  379 SMNNISFVTPSHVDILKAYYYHIKGVYGTRFPEFPPLIFNFTAENQPLFLETPRLATEVKVIEFGQVVELVIQGTSLVGGGLD--HPMHLHGFSFYVVGVGFGNYNISEEDPSSRYNLYDPPYKNTMTVPRNGWIAIRFVADNPGVWFMHCHLDRHQTWGMNVVF---IVKNGREPNQQI 553          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.279e-14
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  147 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 485
            N +V+++ Q+   ++   S+++P HLHG+D +VL +G G F  K D            NT  +   GW A+RF+ADNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  470 NASVEIVFQSTTLLQ---SDSNPMHLHGYDVFVLAQGLGNFDPKRDVEKFNYHNPQLRNTVQVPRGGWAAVRFLADNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 577          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC5_ORYSJ (Putative laccase-5 OS=Oryza sativa subsp. japonica GN=LAC5 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.067e-13
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = -2
Query:  147 VYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 503
            V  L  NT+V+++LQ  +      +E+HP H+HG +F+V+G+G G +   ++              V  P G W A+RF+ADNPG W  HCH + H   G+ +   +     G +P+Q +
Sbjct:  424 VVPLAFNTSVELVLQGTSI---QGAESHPLHMHGFNFFVVGQGFGNYDPVNDPANYNLVDPVERNTVSVPTGGWVAVRFLADNPGVWLMHCHFDVHLSWGLSMAWLV---NDGPLPSQKM 537          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSI (Putative laccase-18 OS=Oryza sativa subsp. indica GN=LAC18 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = -2
Query:  147 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 485
            N +V+++ Q+   ++   S+++P HLHG+D +VL +G G F  K D            NT  +   GW A+RF+ DNPG W  HCH E  FHI MG+  A  VE  G  P  +L
Sbjct:  470 NASVEIVFQSTTLLQ---SDSNPMHLHGYDVFVLAQGLGNFDPKRDVEKFNYHNPQLRNTVQVPRGGWAAVRFLTDNPGMWYLHCHFE--FHIIMGMATAFIVED-GPTPETSL 577          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC6_ARATH (Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 45/154 (29.22%), Postives = 68/154 (44.16%), Query Frame = -2
Query:  195 SLNLPPTPYLGSIKYGLKDAFD-QNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVV 653
            +L+ P TP         + A+D  NG P + +N+              G+   +    + + +I QN   +    +E HP HLHGH F+V+G G G + ++                V    GW A+RFVA+NPG W  HCH + H   GM  +
Sbjct:  415 TLDFPTTP---------EKAYDFVNGAPNDIANDTQAAN---------GTRAIVFEYGSRIQIIFQNTGTLT---TENHPIHLHGHSFYVIGYGTGNYDQQTAKFNLEDPPYLNTIGVPVG-GWAAIRFVANNPGLWLLHCHFDIHQTWGMSTM 546          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: FIO1_SCHPO (Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe GN=fio1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 44/120 (36.67%), Postives = 58/120 (48.33%), Query Frame = -2
Query:  156 SGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGK--FTKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPN 509
            +  Y+      VDVI+ N +  +      HP+HLHGH F VL RGE       + E           +T  I P  +  +RF+ADNPGAW  HCHIE H   G+   LA  +E    IP+
Sbjct:  394 TNAYIFEYGDVVDVIIDNHDTGK------HPFHLHGHTFQVLERGEENAGLYSDQESHTYYDNPMRRDTVEIEPGSFIVIRFIADNPGAWVIHCHIEWHMESGL---LATFIEAPEMIPS 504          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: FET3_KLULA (Iron transport multicopper oxidase FET3 OS=Kluyveromyces lactis GN=FET3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 57/193 (29.53%), Postives = 78/193 (40.41%), Query Frame = -2
Query:  147 NTINGFTKWAINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGR--------GEGK--FTKEDEXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 695
            N  NG      NN++   P  P L +     KDA                + P V    T     ++L  +  ++++L N      N +  HP+HLHGH F ++ R        GEG   F  ED             T  + P     LRF ADNPG W FHCHIE H   G+ ++L    E + N  +Q L
Sbjct:  352 NLKNGVNYAFFNNLTFTAPKVPTLMTALSAGKDA----------------LNPLVYGTNT---NAFVLKKDEIIEIVLNN------NDTGKHPFHLHGHIFQLVDRERGYDDAIGEGPHPFDPEDHNPFPDYPMMRD-TVYVNPQSSIVLRFKADNPGVWFFHCHIEWHLKQGLALLLIEAPEEMQNTESQQL 518          
The following BLAST results are available for this feature:
BLAST of CF832212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
LAC19_ORYSJ8.393e-1533.70Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC19_ORYSI8.393e-1533.70Putative laccase-19 OS=Oryza sativa subsp. indica ... [more]
LAC15_ORYSJ1.432e-1441.67Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC15_ARATH7.105e-1430.00Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV... [more]
LAC18_ORYSJ9.279e-1439.47Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC5_ORYSJ2.067e-1332.50Putative laccase-5 OS=Oryza sativa subsp. japonica... [more]
LAC18_ORYSI2.700e-1338.60Putative laccase-18 OS=Oryza sativa subsp. indica ... [more]
LAC6_ARATH6.015e-1329.22Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=... [more]
FIO1_SCHPO1.026e-1236.67Iron transport multicopper oxidase fio1 OS=Schizos... [more]
FET3_KLULA1.134e-1129.53Iron transport multicopper oxidase FET3 OS=Kluyver... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832212 ID=CF832212; Name=CF832212; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTTTTTTATTCACTCCGAAATTTTATTAATATTAATACCTTTAC
AACAATAGAAACTCCAGGAATAAAGTACATAAAACCCTCTAGCTAGCCTC
AATTTTGTTTAGGGTTCATGAACCTTTTCCCAGTCAAACCACAAGCCAAC
GCCTGGTTTGGAATATTACCAACGGTTTCAACACCAAGAGCAAGAACCAC
ACCCATTCCAATATGGAAATGGGGCTCAATATGGCAGTGAAATGCCCAAG
CACCTGGATTATCAGCAACAAATCTTAAAGCAGTCCAGCCATATGGGAAT
ATCACCGCAGTATTTTTCAATGGTGGATTCTTCAAGTTAAATTTCTTCTC
ATCTTCTTTCGTAAACTTCCCTTCTCCGCGCCCTAATACCCAAAAATCAT
GCCCATGCAAATGCCAAGGGTGGGTTTCACTCAAGTTTGGCCTTATCGCG
TTTGCATTTTGAAGTATAACATCAACTGTGGTGTTTAAACCAAGCATGTA
AACCCCACTTCCAAGAGTTGTATTAGCGTTTACAGGAGGTTTCATCACGT
CATACTCATTCGAGAAGTTTTCGGGGGGACCATTCTGATCAAAAGCATCT
TTAAGACCATATTTGATGGATCCTAAGTAAGGAGTGGGGGGTAAATTCAG
GGACACATTGTTAATAGCCCACTTAGTGAACCCGTTAATGGTGTTTTGAG
TGTTAAGAAGGGTGAGCCGACGGTGGAAATTTGTGGGAGGCTTGGGGGAT
CCCATT
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