CF832212

Overview
NameCF832212
Unique NameCF832212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1050 contig Csv1_Contig1050:235..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: LAC3_BOTFU (Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=lcc3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 33/88 (37.50%), Postives = 41/88 (46.59%), Query Frame = -2
Query:  198 NANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXNTAVIFPYG-WTALRFVADNPGAWAFHCHIEPHFHIGMGV 458
            N N    +++  HP HLHGHDF++LG G G +                    + P G W  L F  DNPGAW  HCHI  H   G+ V
Sbjct:  363 NVNGNPVSINVPHPMHLHGHDFFLLGTGVGTYNNTINGPSLDYDNPTRRDVAMLPAGGWMVLAFQTDNPGAWLMHCHIAWHVSEGLAV 450          
BLAST of CF832212 vs. ExPASy Swiss-Prot
Match: FET3_CANGA (Iron transport multicopper oxidase FET3 OS=Candida glabrata GN=FET3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 53/192 (27.60%), Postives = 77/192 (40.10%), Query Frame = -2
Query:  147 NTINGFTKWAINNVSLNLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVL--------GRGEGKFTKED-EXXXXXXXXXXXNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQAL 695
            N ING      NN++   P  P L ++                 S   D + P +    T     ++L     VD+I+ N +  +      HP+HLHGH F  +         +GE   +  D +           +T  + P     LRF ADNPG W FHCHIE H   G+ VV+     ++ N  +Q L
Sbjct:  347 NLINGVNYAFFNNITYTTPKVPTLLTV----------------LSAGQDALNPFIYGTNT---NTFVLKKGEVVDLIVNNQDTGK------HPFHLHGHVFQTILRDREFDDAKGEKPHSFNDSDHAAYPSIPMKRDTVYLNPQSNMVLRFKADNPGVWFFHCHIEWHLLQGLAVVMVEDPISIQNTASQHL 513          
The following BLAST results are available for this feature:
BLAST of CF832212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
LAC3_BOTFU3.300e-1137.50Laccase-3 (Fragment) OS=Botryotinia fuckeliana GN=... [more]
FET3_CANGA7.352e-1127.60Iron transport multicopper oxidase FET3 OS=Candida... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01H24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01H24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832212 ID=CF832212; Name=CF832212; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTTTTTTATTCACTCCGAAATTTTATTAATATTAATACCTTTAC
AACAATAGAAACTCCAGGAATAAAGTACATAAAACCCTCTAGCTAGCCTC
AATTTTGTTTAGGGTTCATGAACCTTTTCCCAGTCAAACCACAAGCCAAC
GCCTGGTTTGGAATATTACCAACGGTTTCAACACCAAGAGCAAGAACCAC
ACCCATTCCAATATGGAAATGGGGCTCAATATGGCAGTGAAATGCCCAAG
CACCTGGATTATCAGCAACAAATCTTAAAGCAGTCCAGCCATATGGGAAT
ATCACCGCAGTATTTTTCAATGGTGGATTCTTCAAGTTAAATTTCTTCTC
ATCTTCTTTCGTAAACTTCCCTTCTCCGCGCCCTAATACCCAAAAATCAT
GCCCATGCAAATGCCAAGGGTGGGTTTCACTCAAGTTTGGCCTTATCGCG
TTTGCATTTTGAAGTATAACATCAACTGTGGTGTTTAAACCAAGCATGTA
AACCCCACTTCCAAGAGTTGTATTAGCGTTTACAGGAGGTTTCATCACGT
CATACTCATTCGAGAAGTTTTCGGGGGGACCATTCTGATCAAAAGCATCT
TTAAGACCATATTTGATGGATCCTAAGTAAGGAGTGGGGGGTAAATTCAG
GGACACATTGTTAATAGCCCACTTAGTGAACCCGTTAATGGTGTTTTGAG
TGTTAAGAAGGGTGAGCCGACGGTGGAAATTTGTGGGAGGCTTGGGGGAT
CCCATT
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