CF832247

Overview
NameCF832247
Unique NameCF832247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1145 contig Csv1_Contig1145:14..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.486e-15
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = -1
Query:  201 DLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANN 458
            D+ +PD FDN Y+ +L    GL  SDQ+LF      T  IV +F+ ++  FF+ F V+MI+MG +S+LTGTQGEIRSNC   N  +
Sbjct:  259 DIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKR--TRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARNTQS 342          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.165e-15
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  210 LTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 470
            L  LDL TP+ FDN+YF NL    GLLQSDQ LF+  G  T  IV+ +S++  AF   FA +MI+MG++S L+G  G IR  C  VN
Sbjct:  238 LAPLDLVTPNQFDNNYFKNLIQKKGLLQSDQVLFN--GGSTDNIVSEYSNSARAFSSDFAAAMIKMGDISPLSGQNGIIRKVCGSVN 322          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER59_ARATH (Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.358e-15
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = -1
Query:  210 SVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA--DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 476
            ++   LD ST D FDN+YF NL    GLL SDQ LFS+  A   T  +V  +S +++ FF  F  +MIRMGN+S   G  GE+R+NCR +N
Sbjct:  239 NITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTNCRVIN 327          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER68_ARATH (Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.222e-14
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = -1
Query:  210 LDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 461
            LDL TP+ FD  YF  L  + GLL SDQ LF+  G  T  IV ++S +  AF+  F  +MI+MG++S LTG+ G+IR +CRR N
Sbjct:  244 LDLRTPEKFDGSYFMQLVNHRGLLTSDQVLFN--GGSTDSIVVSYSRSVQAFYRDFVAAMIKMGDISPLTGSNGQIRRSCRRPN 325          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PERN_ARMRU (Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  210 LDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA--DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 461
            LD ++ D FDN+YF NL    GLL SDQ LFS+  A   T  +V  +S ++  FF  F  SMIRMG  SL+ G  GE+R+NCR +N
Sbjct:  244 LDRNSTDAFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKRLVEAYSRSQYLFFRDFTCSMIRMG--SLVNGASGEVRTNCRVIN 327          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER4_VITVI (Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = -1
Query:  210 LTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 470
            L  LDL TP  FDN Y+ NL    GLL SDQ L++  G  T   V  + +N   F   F   MI+MG+++ LTG++GEIR +C +VN
Sbjct:  237 LAPLDLQTPTTFDNYYYKNLINQKGLLHSDQVLYN--GGSTDSTVKTYVNNPKTFTSDFVAGMIKMGDITPLTGSEGEIRKSCGKVN 321          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER45_ARATH (Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = -1
Query:  210 VLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 473
            +  N+D ++P  FDN YF NLQ   GL  SDQ LF+   + +   VN+F+++E AF ++F  ++ ++G + +LTG  GEIR +C RVN
Sbjct:  240 IAINMDPTSPRTFDNAYFKNLQQGKGLFTSDQILFTDQRSRST--VNSFANSEGAFRQAFITAITKLGRVGVLTGNAGEIRRDCSRVN 325          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER20_ARATH (Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = -1
Query:  210 LTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTI-PIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 470
            L+ LD+ TP  FDN YF NL    GLL SD  L S      I   V  ++ N+  FF  F  SM++MGN+++LTG +GEIR NCR VN
Sbjct:  248 LSPLDIKTPAYFDNHYFINLLEGRGLLISDNVLVSEDHEGEIFQKVWEYAVNQDLFFIDFVESMLKMGNINVLTGIEGEIRENCRFVN 335          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER47_ARATH (Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.010e-13
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  210 STPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 452
            +T + FDN YF+ LQ  +G+L SDQ LF+TP   T  +VN ++ N+  FF  F  +M +M NL +  G+QGE+R NCR +N
Sbjct:  236 ATRNDFDNAYFNALQMKSGVLFSDQTLFNTPR--TRNLVNGYALNQAKFFFDFQQAMRKMSNLDVKLGSQGEVRQNCRSIN 314          
BLAST of CF832247 vs. ExPASy Swiss-Prot
Match: PER16_ARATH (Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.932e-13
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = -1
Query:  210 VLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 473
            +  N+D ++P+ FDN YF NLQ   GL  SDQ LFS   + +   VN+F+S+E  F ++F  ++ ++G + + TG  GEIR +C RVN
Sbjct:  238 IAINMDPTSPNTFDNAYFKNLQKGMGLFTSDQVLFSDERSRST--VNSFASSEATFRQAFISAITKLGRVGVKTGNAGEIRRDCSRVN 323          
The following BLAST results are available for this feature:
BLAST of CF832247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PER12_ARATH5.486e-1547.67Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PERX_NICSY7.165e-1550.57Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PER59_ARATH9.358e-1547.25Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=... [more]
PER68_ARATH1.222e-1448.81Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=... [more]
PERN_ARMRU1.351e-1348.84Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 S... [more]
PER4_VITVI1.351e-1344.83Peroxidase 4 OS=Vitis vinifera GN=GSVIVT0002396700... [more]
PER45_ARATH2.305e-1342.05Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=... [more]
PER20_ARATH2.305e-1347.73Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=... [more]
PER47_ARATH3.010e-1345.68Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=... [more]
PER16_ARATH3.932e-1342.05Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832247 ID=CF832247; Name=CF832247; organism=Citrus sinensis; type=EST; length=476bp
TTTTTTTTTTTTTTTTTCCAACGGGCTCATAATTTTATTCAGACCCTGAA
AATATTGTTAGGACAAACACGAGACAAGGTACATGAGTTTGTTACCCACA
AACTCTCAACAGCAAAACTACTTCACACAGTTTTATTTTATGCTTTCATG
ATTTAGATAGAGCTGACCAAACCGCCATCTGATGATGATCTGGTTGATAA
ATTGTTTGCATTAACCCTTCTGCAGTTTGACCTGATCTCTCCTTGAGTCC
CTGTTAGAAGGCTTAAATTCCCCATTCTGATCATAGAAACCGCAAAGCTT
TCAAAGAAAGCAGTTTCGTTGCTGCTAAAGTTGTTGACAATGGGAATGGT
ATCGGCGCCGGGTGTCGAAAACAGCTCTTGATCACTCTGTAAAAGGCCAT
TGTTAGCTTGAAGATTGGAGAAATAATCGTTGTCAAAACCATCCGGTGTT
GAGAGATCAAGATTCGTTAGGACGCT
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