CF832249

Overview
NameCF832249
Unique NameCF832249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.028e-43
Identity = 91/154 (59.09%), Postives = 118/154 (76.62%), Query Frame = -3
Query:  383 RGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYF 844
            RGRLYEY+NN+++STI+RYKKA +D++NT ++ E NA +YQQE+AKLR QI  +QNSNRN++G+SLS L+ KELK +E RLEK ISRIRSKK+ELL  EIE  QKRE++L N N  LR K+AE ER QQ+ + M  GS    I++    SR+YF
Sbjct:   51 RGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIEA--LASRNYF 202          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.063e-40
Identity = 91/172 (52.91%), Postives = 122/172 (70.93%), Query Frame = -3
Query:  380 RGRLYEYSN-NSVKSTIDRYKKATADTSNTGSICEANA-QFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMN-------------LMQGGSSYEIIQSQP--FDSRSYFQ 844
            RGRLYE+SN NS +STI+RYKKA+A TS +  + + N+ Q++QQEAAK+R QI  +QN+NR+++GES+  +  KELK++E RLEKGISRIRSKK+ELLF+EIEYMQKRE DL N N  LRAK+AE ER + +               +  G SS   +++ P  FD+R Y+Q
Sbjct:   51 RGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQAAEDDEMAPAPAVGGGSSSGTELEALPATFDTREYYQ 222          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.589e-36
Identity = 87/177 (49.15%), Postives = 123/177 (69.49%), Query Frame = -3
Query:  365 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGS-ICEANAQ-FYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNL-------MQGGSSYEIIQSQPF-------DSRSYFQVNALQ 844
            RGRLYEYSNN+ VK+TIDRYKKA A  S +G+ + E NAQ +YQQE+AKLR QI  +QN+N++++G+++S L+ KELK +E+RLEKGIS+IR++KNELL +EI YM KRE++L N N  LR KIAE E+  Q + +       +Q  ++ +  Q  PF       D + +F +N  +
Sbjct:   51 RGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKREIELQNDNMDLRTKIAEEEQQLQQVTVARSAAMELQAAAAAQQQQQNPFAVAAAQLDMKCFFPLNLFE 227          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 7.923e-20
Identity = 51/121 (42.15%), Postives = 79/121 (65.29%), Query Frame = -3
Query:  479 GRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIA 841
            GRLYEYS+ S+KS IDRY K+  D     +   +  +F+Q+EAA LR Q+ N+Q ++R ++GE LSGLN KEL+++E +LE  +  +R+KK+ +L  EI  + ++   +H  N  L  KI+
Sbjct:   52 GRLYEYSSTSMKSVIDRYGKSK-DEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKIS 171          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.278e-17
Identity = 49/132 (37.12%), Postives = 78/132 (59.09%), Query Frame = -3
Query:  446 GRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNL 841
            GRLYE+S+ ++K+ IDRY  A  +    G    +  + +Q+EAA LR Q+ N+Q S++ ++GE LSGL  ++L+ +E RLE  +  IR +K+ LL +EIE +  +   +H  N  L   +  N   QQ + L
Sbjct:   52 GRLYEFSSTNMKTVIDRYTNAKEEL--LGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGSLIHQENIELSRSL--NVMSQQKLEL 179          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.941e-16
Identity = 41/125 (32.80%), Postives = 77/125 (61.60%), Query Frame = -3
Query:  470 RGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE 844
            +G+LYE+++++++ TIDRY + T D  +T  + E N Q  + EAA +  +I  ++ S R +LGE +   + +EL+ +E +LEK +  IR++K ++   +IE ++++E  L   N+ L  K   +E
Sbjct:   51 KGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHE 175          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.546e-15
Identity = 39/106 (36.79%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  521 RLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREV 838
            RLY+++++S+KS I+RY +   D   T +   + A+ +QQEAA LR Q+ N+Q  +R +LG+ LSGL+ ++L+N+E++LE  +  IR +K+ ++  +I+ + ++ V
Sbjct:   53 RLYDFASSSMKSIIERYNETKEDPHQTMN-ASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRKVV 157          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.546e-15
Identity = 49/136 (36.03%), Postives = 84/136 (61.76%), Query Frame = -3
Query:  455 RGRLYEY-SNNSVKSTIDRYKKATADTSNTG-SICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE----NERGQQN 844
            RG+LYE+ S++S+  T++RY+K       T  S  EA     QQE  KL+ +   +Q S RN+LGE L  LN KEL+++E +L+  + +IRS + +L+  +++ +Q++E  L+ +N+ L+ ++ E    N + QQN
Sbjct:   51 RGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLNLQWQQN 186          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.020e-15
Identity = 47/149 (31.54%), Postives = 85/149 (57.05%), Query Frame = -3
Query:  407 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER--GQQNMNLMQGGSSYEIIQSQ 844
            +G+L+EYS +S ++  ++RY +             + ++ +  E AKL+ ++  ++ + RN +GE L  L+ KEL+++E +L+  I  IRS+KN+ +F  I  +QK++  L + N  L  KI E E+  GQQ   L+Q  +S  ++  Q
Sbjct:   51 KGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREKKTGQQEGQLVQCSNSSSVLLPQ 199          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15
Identity = 46/131 (35.11%), Postives = 78/131 (59.54%), Query Frame = -3
Query:  455 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQN 844
            +G+LYE+S++S ++  ++RY++ + D          + + +  E   L+ ++  +Q S R +LGE L  L  KEL+ +E +LE  +  IRSKKN+LLF  I  +QK+E  L N N +L+ K+ E E+ + N
Sbjct:   51 KGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQ-KLMETEKEKNN 180          
The following BLAST results are available for this feature:
BLAST of CF832249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
AGL11_ARATH1.028e-4359.09Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD21_ORYSJ1.063e-4052.91MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD13_ORYSJ1.589e-3649.15MADS-box transcription factor 13 OS=Oryza sativa s... [more]
MAD27_ORYSJ7.923e-2042.15MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD57_ORYSJ6.278e-1737.12MADS-box transcription factor 57 OS=Oryza sativa s... [more]
SOC1_ARATH6.941e-1632.80MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD23_ORYSJ1.546e-1536.79MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AGL9_PETHY1.546e-1536.03Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
AGL8_ARATH2.020e-1531.54Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
MAD18_ORYSJ3.445e-1535.11MADS-box transcription factor 18 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832249 ID=CF832249; Name=CF832249; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTACTAATCATTAATATCATATTCGAAATTAACATCA
AATGCAGAGACTTTGTGTTTGCATTAGGCATACAGAATATGAATTCATGG
CTGACAAACATATATATAATATTTATGAGTCTTAAAATAGTTTATATAGC
TACTAGCTTAGGCCCCTGATGATCACTTAATTAAGCAAAGTTGATTTCTT
CGCTGCATCTTATAGCAATTTTGAGCGCGCACCTGCACACCTTTTATCTA
GAATGAAGTAATAGCTAGATACCCTCCATAGGATATGACATGGCAGAATA
TTCTTCAAACATATTAAACTAACTGAAGGGCCATCTGATCCTGGCGTGGG
TAATGATTGGTGGGCTGTAATGCATTGACTTGGAAATAGCTCCGGGAATC
AAATGGCTGAGACTGTATAATCTCGTAGCTACTCCCTCCTTGCATCAAAT
TCATGTTCTGCTGTCCTCTTTCATTCTCGGCTATCTTTGCTCGGAGAAGC
TGGTTGCTGTTGTGCAAGTCAACTTCCCTCTTCTGCATGTACTCAATTTC
TGCAAACAGCAGCTCATTCTTTTTAGATCGGATTCTGCTAATACCTTTCT
CTAAACGAGTCTCCATGTTCTTGAGTTCCTTGAAATTTAACCCACTTAGT
GATTCACCCAACATGTTTCTGTTTGAATTTTGCATATTGCTAATTTGTAT
CCTCAGCTTGGCAGCTTCTTGCTGGTAGAACTGAGCATTTGCTTCACAGA
TAGACCCAGTATTTGAGGTATCTGCAGTGGCCTTCTTGTACCTGTCAATT
GTTGATTTCACACTGTTGTTGGAATACTCATAAAGGCGGCCGCGGC
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