CF832249

Overview
NameCF832249
Unique NameCF832249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 44/129 (34.11%), Postives = 78/129 (60.47%), Query Frame = -3
Query:  476 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQ-----QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 844
            RGRL+E+S +S +  T++RY+    + ++    CEA+A         QE  KL+ ++  +Q + RN+LGE L  L+ KEL+ +E ++E  +  IRS KN+ L  ++  ++++E  L ++N+ L+ KI E
Sbjct:   51 RGRLFEFSTSSCMYKTLERYRSCNYNLNS----CEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQE 175          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 44/129 (34.11%), Postives = 78/129 (60.47%), Query Frame = -3
Query:  476 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQ-----QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE 844
            RGRL+E+S +S +  T++RY+    + ++    CEA+A         QE  KL+ ++  +Q + RN+LGE L  L+ KEL+ +E ++E  +  IRS KN+ L  ++  ++++E  L ++N+ L+ KI E
Sbjct:   51 RGRLFEFSTSSCMYKTLERYRSCNYNLNS----CEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQE 175          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 49/154 (31.82%), Postives = 79/154 (51.30%), Query Frame = -3
Query:  404 RGRLYEYSNNSVKSTI----DRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAE---NERGQQNMNLMQGGSSYEIIQSQP 844
            +G+LYEY+ +S    I    +RY  A     +  S  E N   +  E  KL+ +I  +Q  +++++GE L  LN KEL+ +E +LE  +  I S+K+ L+   I  +QK+E  L   N+ L+ ++ E   N RGQQ +            Q+QP
Sbjct:   51 KGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGN---WCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQVGQWDQTQVQAQAQAQP 201          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 44/128 (34.38%), Postives = 77/128 (60.16%), Query Frame = -3
Query:  467 RGRLYEY-SNNSVKSTIDRYKKATADTSNTG-SICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER 844
            RG+LYE+ S++S+  T++RY+K          S  EA     QQE  KL+ +   +Q S RN+LGE L  LN KEL+++E +L+  + +IRS + +L+  ++   Q++E  L+ +N+ L+ ++ E  +
Sbjct:   51 RGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGSQ 178          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.890e-13
Identity = 35/122 (28.69%), Postives = 73/122 (59.84%), Query Frame = -3
Query:  482 RGRLYEYSNNSVKSTIDRYKKATADTSNTGS-ICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKI 844
            RG+LYE+ +  +  T+++Y     +   + S +     Q + QE ++L+ ++  +Q S R+MLGE L  L+ KEL+ +E +LE  +S+ R +K +++  +++ ++++E  L   N+ L+ K+
Sbjct:   51 RGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 172          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.890e-13
Identity = 39/133 (29.32%), Postives = 83/133 (62.41%), Query Frame = -3
Query:  446 GRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE-RGQQNMNL 841
            G+LYE+SN  V  TI+RY +   +  +  ++   + Q  +QE  KL+ +  ++  ++RN++GE L G++ KEL+ +E +LE  +S  R +K +++  ++E ++++E +L + N  L+ +  +++ +G Q++ L
Sbjct:   52 GKLYEFSNVGVGRTIERYYRCKDNLLDNDTL--EDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLETEDHDFKGFQDLLL 182          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.469e-13
Identity = 42/134 (31.34%), Postives = 78/134 (58.21%), Query Frame = -3
Query:  458 RGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFY--QQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE--RGQQ 844
            RG+LYE+ S  S+  T+++Y+K +     T      + Q    + E  KL+ ++ N+Q + RN+LGE L  L  KEL+++E +L+  +  +R+ + + L  ++  +Q++E  +  +N+ LR K+ E+   RGQQ
Sbjct:   51 RGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQ 184          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.469e-13
Identity = 42/134 (31.34%), Postives = 78/134 (58.21%), Query Frame = -3
Query:  458 RGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFY--QQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE--RGQQ 844
            RG+LYE+ S  S+  T+++Y+K +     T      + Q    + E  KL+ ++ N+Q + RN+LGE L  L  KEL+++E +L+  +  +R+ + + L  ++  +Q++E  +  +N+ LR K+ E+   RGQQ
Sbjct:   51 RGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQ 184          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.183e-13
Identity = 48/174 (27.59%), Postives = 89/174 (51.15%), Query Frame = -3
Query:  377 RGRLYEY-SNNSVKSTIDRYKKATAD------TSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSY-----------EIIQSQPFDSRSYFQV 844
            RG+LYE+ S +S+  T++RY+K          TS    + E ++Q   QE  KL+ +  ++Q S RN++GE L  L+ K+L+ +E +L+  + +IRS + + +  ++  +Q++E  L  +N+ LR ++   +     +NL      Y           E+ Q QP +     Q+
Sbjct:   51 RGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQ---QEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQI 221          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.381e-13
Identity = 39/133 (29.32%), Postives = 73/133 (54.89%), Query Frame = -3
Query:  449 RGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMN 844
            +G+L+EY+ +S ++  ++RY++ +            +   +  E AKL+ ++  +Q + +  +GE L  LN KEL+N+E +L   +  IRS+KN+L+   I  +QK++  L   N  L  K+ E E+  +  N
Sbjct:   51 KGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVEQQN 183          
The following BLAST results are available for this feature:
BLAST of CF832249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
MADS5_ORYSJ1.447e-1334.11MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI1.447e-1334.11MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MAD15_ORYSJ1.447e-1331.82MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AGL9_SOLLC1.447e-1334.38Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MAD17_ORYSJ1.890e-1328.69MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL13_ARATH1.890e-1329.32Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
MADS7_ORYSJ2.469e-1331.34MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI2.469e-1331.34MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MTF1_PEA7.183e-1327.59MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL8_SOLCO9.381e-1329.32Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832249 ID=CF832249; Name=CF832249; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTACTAATCATTAATATCATATTCGAAATTAACATCA
AATGCAGAGACTTTGTGTTTGCATTAGGCATACAGAATATGAATTCATGG
CTGACAAACATATATATAATATTTATGAGTCTTAAAATAGTTTATATAGC
TACTAGCTTAGGCCCCTGATGATCACTTAATTAAGCAAAGTTGATTTCTT
CGCTGCATCTTATAGCAATTTTGAGCGCGCACCTGCACACCTTTTATCTA
GAATGAAGTAATAGCTAGATACCCTCCATAGGATATGACATGGCAGAATA
TTCTTCAAACATATTAAACTAACTGAAGGGCCATCTGATCCTGGCGTGGG
TAATGATTGGTGGGCTGTAATGCATTGACTTGGAAATAGCTCCGGGAATC
AAATGGCTGAGACTGTATAATCTCGTAGCTACTCCCTCCTTGCATCAAAT
TCATGTTCTGCTGTCCTCTTTCATTCTCGGCTATCTTTGCTCGGAGAAGC
TGGTTGCTGTTGTGCAAGTCAACTTCCCTCTTCTGCATGTACTCAATTTC
TGCAAACAGCAGCTCATTCTTTTTAGATCGGATTCTGCTAATACCTTTCT
CTAAACGAGTCTCCATGTTCTTGAGTTCCTTGAAATTTAACCCACTTAGT
GATTCACCCAACATGTTTCTGTTTGAATTTTGCATATTGCTAATTTGTAT
CCTCAGCTTGGCAGCTTCTTGCTGGTAGAACTGAGCATTTGCTTCACAGA
TAGACCCAGTATTTGAGGTATCTGCAGTGGCCTTCTTGTACCTGTCAATT
GTTGATTTCACACTGTTGTTGGAATACTCATAAAGGCGGCCGCGGC
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