CF832249

Overview
NameCF832249
Unique NameCF832249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 37/131 (28.24%), Postives = 66/131 (50.38%), Query Frame = -3
Query:  449 GRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMN 841
            G+L++YS++S+K  ++R    + +                   ++L  +IS   +  R M GE L GLN +EL+ +E  LE G+SR+  +K + +  EI  +Q++ + L   N+ LR ++ E      N N
Sbjct:   52 GKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEISNNNNNNN 182          
BLAST of CF832249 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.781e-11
Identity = 42/162 (25.93%), Postives = 82/162 (50.62%), Query Frame = -3
Query:  362 GRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRS--YFQVNALQP 841
            G+++E+S+ S+   +D+Y K T        + +A  +    E  K++    NMQ   R++ GE ++ LN +EL  +E  LE G++ IR+K+NE+L      M+K+   +      L  ++ + E    N N+ + G  ++  ++  + +     F+V  +QP
Sbjct:   52 GKMHEFSSTSLVDILDQYHKLTGRR-----LLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVL----RMMRKKTQSMEEEQDQLNCQLRQLEIATMNRNMGEIGEVFQQRENHDYQNHMPFAFRVQPMQP 204          
The following BLAST results are available for this feature:
BLAST of CF832249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
JOIN_SOLLC8.781e-1128.24MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
FBP1_PETHY8.781e-1125.93Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832249 ID=CF832249; Name=CF832249; organism=Citrus sinensis; type=EST; length=846bp
TTTTTTTTTTTTTTTACTAATCATTAATATCATATTCGAAATTAACATCA
AATGCAGAGACTTTGTGTTTGCATTAGGCATACAGAATATGAATTCATGG
CTGACAAACATATATATAATATTTATGAGTCTTAAAATAGTTTATATAGC
TACTAGCTTAGGCCCCTGATGATCACTTAATTAAGCAAAGTTGATTTCTT
CGCTGCATCTTATAGCAATTTTGAGCGCGCACCTGCACACCTTTTATCTA
GAATGAAGTAATAGCTAGATACCCTCCATAGGATATGACATGGCAGAATA
TTCTTCAAACATATTAAACTAACTGAAGGGCCATCTGATCCTGGCGTGGG
TAATGATTGGTGGGCTGTAATGCATTGACTTGGAAATAGCTCCGGGAATC
AAATGGCTGAGACTGTATAATCTCGTAGCTACTCCCTCCTTGCATCAAAT
TCATGTTCTGCTGTCCTCTTTCATTCTCGGCTATCTTTGCTCGGAGAAGC
TGGTTGCTGTTGTGCAAGTCAACTTCCCTCTTCTGCATGTACTCAATTTC
TGCAAACAGCAGCTCATTCTTTTTAGATCGGATTCTGCTAATACCTTTCT
CTAAACGAGTCTCCATGTTCTTGAGTTCCTTGAAATTTAACCCACTTAGT
GATTCACCCAACATGTTTCTGTTTGAATTTTGCATATTGCTAATTTGTAT
CCTCAGCTTGGCAGCTTCTTGCTGGTAGAACTGAGCATTTGCTTCACAGA
TAGACCCAGTATTTGAGGTATCTGCAGTGGCCTTCTTGTACCTGTCAATT
GTTGATTTCACACTGTTGTTGGAATACTCATAAAGGCGGCCGCGGC
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