CF832255

Overview
NameCF832255
Unique NameCF832255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.527e-40
Identity = 79/142 (55.63%), Postives = 104/142 (73.24%), Query Frame = 2
Query:  224 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649
            +V+ +F++M L+ +LL+GIY YGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+LQ +D     CQAL+L+PTRELA QI+ V++ LGDY+ +  HAC+GGT V +D + L+ G  +V GTPGRV DM++RQ L
Sbjct:   23 KVHATFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDTNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQL 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.722e-40
Identity = 78/143 (54.55%), Postives = 108/143 (75.52%), Query Frame = 2
Query:  224 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            +V+ +F++M L+ +LL+GIYAYGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+L+ +D    +CQAL+L+PTRELA QI+ V++ LGDY+ +  HAC+GG +V ED + LQ G  +V GTPGRV D+++R++L+
Sbjct:   23 KVHRTFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQGQQIVSGTPGRVIDVIKRRNLQ 165          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.009e-39
Identity = 81/149 (54.36%), Postives = 107/149 (71.81%), Query Frame = 2
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658
            T+YD V   FD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ+++      QAL+LAPTRELA QI+ V+ A+G YL V VHA +GGTS+ +D    ++GV +VVGTPGRV DM+ R+  + D
Sbjct:   16 TNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVLDMIERRYFKTD 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.115e-38
Identity = 78/142 (54.93%), Postives = 106/142 (74.65%), Query Frame = 2
Query:  224 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649
            +V+ +F++M L+  LL+GIYAYGFE PSAIQ R I+    G D I QAQSGTGKTATF  G+L+ LD    +CQALVL+PTRELA QI+ V++ LGDY+ ++ +AC+GG +V  D + LQ G  +V GTPGRV D+++R++L
Sbjct:   23 KVHRTFESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTDIKRLQQGQQIVSGTPGRVLDVIKRRNL 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.244e-38
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 2
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658
            T+YD+V   FD M L++ LL+G+Y YGFE+PSAIQQR I+P  +  DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGTS  ED   L+    +VVGTPGRV D ++R   + D
Sbjct:   16 TNYDKVVYKFDDMNLKDELLKGVYGYGFEEPSAIQQRAILPIVEEHDVLAQAQSGTGKTGTFSIAALQRIDSSIKAPQALILAPTRELALQIQKVVIALAFHMDVKVHACIGGTSFVEDTEGLK-DAQIVVGTPGRVSDNIQRHRFKTD 163          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.244e-38
Identity = 81/139 (58.27%), Postives = 99/139 (71.22%), Query Frame = 2
Query:  227 VYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQ 643
            V  +F++M LQENLLRGIY YGFE PSAIQ R I    +G DVI QAQSGTGKTATF  G+LQ +D      QALVL+PTRELA QI +V+R LGDY+ V   AC GG ++ +D   +  G HV+ GTPGRV DM++R+
Sbjct:   21 VSPTFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISKVNKGCHVMSGTPGRVLDMIKRR 159          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.439e-38
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC---VGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658
            SFD M L +NLLRGIY+YGFEKPS+IQQR I PF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L      C   VGGT V +D R LQAGV V VGTPGRV D+++R +LR +
Sbjct:   27 SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQAGVVVAVGTPGRVSDVIKRGALRTE 170          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC---VGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658
            SFD M L +NLLRGIY+YGFEKPS+IQQR I PF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L      C   VGGT V +D R LQAGV V VGTPGRV D+++R +LR +
Sbjct:   27 SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGALRTE 170          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC---VGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658
            SFD M L +NLLRGIY+YGFEKPS+IQQR I PF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L      C   VGGT V +D R LQAGV V VGTPGRV D+++R +LR +
Sbjct:   27 SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGALRTE 170          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.746e-37
Identity = 73/139 (52.52%), Postives = 101/139 (72.66%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            SFD MG+ + +LRG+Y YG++KPS IQQR +VP  KG DVI QAQSGTGKT+     + Q ++    + Q LVL+P+RELA Q EK ++A+G +  ++ HAC+GG S+ ED + L+ GVH V GTPGRV+DM++R SL+
Sbjct:   23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQ 161          
The following BLAST results are available for this feature:
BLAST of CF832255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_PICST4.527e-4055.63ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]
FAL1_CANAL7.722e-4054.55ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]
IF4A_CANAL1.009e-3954.36ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
FAL1_LODEL1.115e-3854.93ATP-dependent RNA helicase FAL1 OS=Lodderomyces el... [more]
IF4A_VANPO3.244e-3855.03ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
FAL1_ASHGO3.244e-3858.27ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
IF4A_LEIBR9.439e-3857.64Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIMA1.610e-3757.64Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN1.610e-3757.64Probable eukaryotic initiation factor 4A OS=Leishm... [more]
RH34_ARATH2.746e-3752.52DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832255 ID=CF832255; Name=CF832255; organism=Citrus sinensis; type=EST; length=661bp
TTGGAAACCCTAACAACTATTTTCTCTCAAATCAATCCTCTCCTTCTCTT
TGAAGAAAAAAGAAAACCAACTCTTTCTCTCGGATTTTAATCACCATCAT
CAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTTGA
TGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGGGC
AAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAATG
GGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCCTATGGGTTTGAGAA
GCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACTTG
ACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCTGC
TCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCT
GGTATTGGCACCCACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGA
GGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGG
ACAAGTGTTCACGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGT
TGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGCCGACAGTCTTTAC
GCCCTGATTAC
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