CF832255

Overview
NameCF832255
Unique NameCF832255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.325e-36
Identity = 79/142 (55.63%), Postives = 98/142 (69.01%), Query Frame = 2
Query:  224 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649
            +V  +F++M L+ +LLRGIY YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +D    + QALVL+PTRELA Q E V+  LGDYL V  HAC GG ++ +D + +     VV GTPGRV DM++RQ L
Sbjct:   20 KVSATFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVL 161          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.154e-35
Identity = 78/137 (56.93%), Postives = 99/137 (72.26%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHED-QRILQAGVHVVVGTPGRVFDMLRRQ 643
            +F++M L+E LLRGIY+YGFE PSAIQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QALVL+PTRELA QI KV+  LGDY+ VK +A  GG ++ +D ++I + G  V+ GTPGRV DM++R+
Sbjct:   24 TFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKKIQKHGCQVISGTPGRVLDMIKRR 160          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 80/146 (54.79%), Postives = 102/146 (69.86%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVK----VHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            SFD M L +NLLRGIY++GFEKPS+IQQR IVPF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L           VGGT V +D R LQAG  V VGTPGRV D+ +R ++R ++
Sbjct:   27 SFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELALQTAEVITRIGEFLAEGNSSFCATFVGGTRVQDDYRKLQAGSIVAVGTPGRVVDVTKRGAMRTEH 172          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 79/145 (54.48%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHA----CVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658
            SFD M L +NLLRGIY++GFEKPS+IQQR IVPF +G D+I QAQSGTGKT  F  G+LQ+LD+     Q LVL+PTRELA Q  +V+  +G++L     +     VGGT V +D R LQ+G  V VGTPGRV D+ +R ++R +
Sbjct:   27 SFDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLVLSPTRELAMQTAEVITRIGEFLAEGSSSFCATFVGGTRVQDDYRKLQSGTIVAVGTPGRVVDVTKRGAMRTE 171          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 75/144 (52.08%), Postives = 101/144 (70.14%), Query Frame = 2
Query:  224 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQA-GVHVVVGTPGRVFDMLRRQSLR 652
            +V  +F++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++ +D + +Q  G   V GTPGRV DM+++Q L+
Sbjct:   20 KVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQ 163          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 75/144 (52.08%), Postives = 101/144 (70.14%), Query Frame = 2
Query:  224 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQA-GVHVVVGTPGRVFDMLRRQSLR 652
            +V  +F++M L+++LLRGIY+YGFE PS+IQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QAL+L+PTRELA QI +V++ LGDY+ V   A  GG ++ +D + +Q  G   V GTPGRV DM+++Q L+
Sbjct:   20 KVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQ 163          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 77/143 (53.85%), Postives = 99/143 (69.23%), Query Frame = 2
Query:  224 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHED-QRILQAGVHVVVGTPGRVFDMLRRQSL 649
            ++  +F++M L+++LLRGIY YGFE PSAIQ R I     G DVI QAQSGTGKTATF  G+LQ +D      QALVL+PTRELA QI +V+  LGDY+ V+ +A  GG ++ +D  R+ + G  VV GTPGRV DM +R  L
Sbjct:   20 KISPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLL 162          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A2_ORYSJ (Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica GN=Os02g0221300 PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.331e-34
Identity = 78/183 (42.62%), Postives = 106/183 (57.92%), Query Frame = 2
Query:  113 DMAGLAPEGSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            D   +AP     ++++  T   ++++T G  F               + E+L+        +KPSA+ QRGIVP C GLD+IQQ+  GT  T T C GILQ+LDY   +CQALVL PT +LA + + V+  LG +L  K HA  GGTS HEDQ+IL  GV V VGTP  V  ML+ ++L PD+
Sbjct:   24 DSNSIAPSAIAINSKKKQTT-KDIVTTQGAQF---------------ISESLIGETQTKDLDKPSAVHQRGIVPLCNGLDIIQQSLFGT--TVTLCCGILQRLDYASTECQALVLVPTHDLAHETQNVIGVLGQFLSAKAHAFCGGTSAHEDQQILSTGVQVAVGTPCHVLGMLQGRALCPDH 188          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_PHANO (ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria nodorum GN=FAL1 PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.406e-33
Identity = 80/151 (52.98%), Postives = 95/151 (62.91%), Query Frame = 2
Query:  203 DFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            +F TS +  V  +F+AM L+ENLLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ                          V+  LGDY+ V+ HAC+GGT+V ED R L  G HVV GTPGRV DM+RR++LR
Sbjct:   14 EFSTSKEVTVAPTFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQS-------------------------VIMGLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLR 139          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.577e-27
Identity = 66/135 (48.89%), Postives = 87/135 (64.44%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRR 640
            SF+   L+  LL GI+  GFEKPS IQ+  I     G DV+ +A++GTGKTA+F    LQQ+   L + QAL+L PTRELA Q  +V+R LG +LG++     GGTS+ +D   L   VHV+VGTPGRV D+  R
Sbjct:   31 SFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHLGIQCMVTTGGTSLKDDILRLNDPVHVLVGTPGRVLDLAAR 165          
The following BLAST results are available for this feature:
BLAST of CF832255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_KLULA2.325e-3655.63ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
FAL1_CANGA1.154e-3556.93ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
IF4A_TRYCR2.571e-3554.79Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_TRYBB2.571e-3554.48Probable eukaryotic initiation factor 4A OS=Trypan... [more]
FAL1_YEAST7.479e-3552.08ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS77.479e-3552.08ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_VANPO7.479e-3553.85ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
IF4A2_ORYSJ6.331e-3442.62Putative eukaryotic initiation factor 4A-2 OS=Oryz... [more]
FAL1_PHANO2.406e-3352.98ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria n... [more]
DHH1_PICST2.577e-2748.89ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832255 ID=CF832255; Name=CF832255; organism=Citrus sinensis; type=EST; length=661bp
TTGGAAACCCTAACAACTATTTTCTCTCAAATCAATCCTCTCCTTCTCTT
TGAAGAAAAAAGAAAACCAACTCTTTCTCTCGGATTTTAATCACCATCAT
CAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTTGA
TGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGGGC
AAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAATG
GGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCCTATGGGTTTGAGAA
GCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACTTG
ACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCTGC
TCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCT
GGTATTGGCACCCACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGA
GGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGG
ACAAGTGTTCACGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGT
TGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGCCGACAGTCTTTAC
GCCCTGATTAC
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