CF832255

Overview
NameCF832255
Unique NameCF832255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DHH1_CHAGB (ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.279e-26
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 2
Query:  239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQ 643
            F+  GL+ +LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++  + + Q L+L PTRELA Q  +V + LG +LG+ V    GGT + +D   LQ  VH+VVGTPGR+ D+  +Q
Sbjct:   13 FEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILDLAGKQ 147          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DHH1_MAGGR (ATP-dependent RNA helicase DHH1 OS=Magnaporthe grisea GN=DHH1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.849e-26
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 2
Query:  239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDM 631
            F+  GL+ +LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L+ ++  + + Q L+L PTRELA Q  +V + LG +LG+ V    GGT++ +D   LQ  VH+VVGTPGR+ D+
Sbjct:   38 FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILDL 168          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.720e-26
Identity = 58/136 (42.65%), Postives = 87/136 (63.97%), Query Frame = 2
Query:  233 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRR 640
            + F+   L+ +LL+GIY  GFEKPS IQ+  I     G D++ +A++GTGKT  FC  +L+++D      QA++L PTRELA Q  +V + L  YL ++V    GGTS+ +D   L   VH++VGTPGR+ D+ ++
Sbjct:  124 NEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKK 259          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.346e-26
Identity = 67/164 (40.85%), Postives = 97/164 (59.15%), Query Frame = 2
Query:  164 DTKMNELLSTDGQDFFTSYDEVYD----SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQ 643
            DT   + L+   +D     ++V +    SF+   L+  LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA+F    LQ +   L + QAL+L PTRELA Q  +V+R LG ++G +     GGTS+ +D   L   VH++VGTPGRV D+  R+
Sbjct:    3 DTNWKQNLNLPPKDTRPQTEDVLNTKGKSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARK 166          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.288e-26
Identity = 61/135 (45.19%), Postives = 85/135 (62.96%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRR 640
            SF+  GL+  LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA+F    LQQ+   L + Q L+L PTRELA Q  +V++ LG +L ++     GGT + +D   L   VH++VGTPGRV D+  R
Sbjct:   30 SFEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHLKLQCMVTTGGTLLRDDVMRLDEPVHILVGTPGRVLDLAAR 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.288e-26
Identity = 62/136 (45.59%), Postives = 87/136 (63.97%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQ 643
            +F+   L+  LL GI+  GFEKPS +Q+  I     G D++ +A++GTGKTA+F    LQQ    + + QAL+L PTRELA Q  +V+R LG +LG++     GGTS+ +D   L   VHV+VGTPGRV D+  R+
Sbjct:   31 TFEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVLDLASRK 166          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DHH1_GIBZE (ATP-dependent RNA helicase DHH1 OS=Gibberella zeae GN=DHH1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.082e-25
Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = 2
Query:  239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDM 631
            F+   L+ +LL GI+  GFEKPS IQ+  I     G D++ +A++GTGKTA F    L++++  + + Q L+L PTRELA Q  +V + LG +LG+ V    GGT + +D   LQ  VH+VVGTPGR+ D+
Sbjct:   44 FENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKISKIQCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRILDL 174          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.414e-25
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 2
Query:  233 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRR 640
            + F+   L+  LL GIY  GFE+PS IQ+  I     G D++ +A++GTGKTA FC   L+++D      Q ++L PTRELA Q  +V + LG YL ++V    GGTS+ +D   L   VH++VGTPGR+ D+ R+
Sbjct:  147 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRK 282          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.846e-25
Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = 2
Query:  239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDM 631
            F+   L+  LL GI+  GFE PS IQ+  I     G D++ +A++GTGKTA F    LQQ++  + + QAL++ PTRELA Q  +V + LG +LG+KV    GGT++ +D   L+  VHV+VGTPGRV D+
Sbjct:   30 FEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRLEDTVHVLVGTPGRVLDL 160          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.412e-25
Identity = 59/136 (43.38%), Postives = 86/136 (63.24%), Query Frame = 2
Query:  233 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRR 640
            + F+   L+ +LLRGIY  GFEKPS IQ+  I     G D++ +A++GTGKT  FC   L+++D      QA++L PTRELA Q  +V + L  YL ++V    GGTS+ +D   L   VH++VGTPGR+ D+ ++
Sbjct:  154 NEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKK 289          
The following BLAST results are available for this feature:
BLAST of CF832255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_CHAGB1.279e-2644.44ATP-dependent RNA helicase DHH1 OS=Chaetomium glob... [more]
DHH1_MAGGR2.849e-2645.04ATP-dependent RNA helicase DHH1 OS=Magnaporthe gri... [more]
RH12_ARATH3.720e-2642.65DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
DHH1_CANAL6.346e-2640.85ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
DHH1_PICGU8.288e-2645.19ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]
DHH1_DEBHA8.288e-2645.59ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
DHH1_GIBZE1.082e-2544.27ATP-dependent RNA helicase DHH1 OS=Gibberella zeae... [more]
RH12_ORYSJ1.414e-2543.38DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]
DHH1_YARLI1.846e-2545.80ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
RH6_ARATH2.412e-2543.38DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832255 ID=CF832255; Name=CF832255; organism=Citrus sinensis; type=EST; length=661bp
TTGGAAACCCTAACAACTATTTTCTCTCAAATCAATCCTCTCCTTCTCTT
TGAAGAAAAAAGAAAACCAACTCTTTCTCTCGGATTTTAATCACCATCAT
CAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTTGA
TGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGGGC
AAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAATG
GGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCCTATGGGTTTGAGAA
GCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACTTG
ACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCTGC
TCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCT
GGTATTGGCACCCACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGA
GGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGG
ACAAGTGTTCACGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGT
TGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGCCGACAGTCTTTAC
GCCCTGATTAC
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