CF832255

Overview
NameCF832255
Unique NameCF832255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DBP5_USTMA (ATP-dependent RNA helicase DBP5 OS=Ustilago maydis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.496e-22
Identity = 57/140 (40.71%), Postives = 89/140 (63.57%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649
            SF+A+GL ENLL+GIYA  ++KPS IQ++ +    +    ++I Q+QSGTGKTA F   +L ++DY L + QA+ LAP+RELA+QI  V R +  +  V    C+      E +R  +    +++GTPG+ FDM++ + +
Sbjct:   65 SFEALGLHENLLKGIYAMKYQKPSKIQEKALPLLLQNPPKNMIGQSQSGTGKTAAFILTMLSRIDYDLQKPQAIALAPSRELARQIMDVARTMSKFTNVTTCLCL----PDEVKRGEKITAQLIIGTPGKTFDMIKSKGI 200          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DBP5_BOTFB (ATP-dependent RNA helicase dbp5 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.259e-22
Identity = 65/175 (37.14%), Postives = 105/175 (60.00%), Query Frame = 2
Query:  137 GSQFDARQYDTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGL-VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649
            G      QY+ ++ +L    G +    Y    ++F+ +G+  ++L+G+YA  F+KPS IQ++ +    +    ++I Q+QSGTGKTA F   IL +LD+      QAL LAP+RELA+QIE V+R++G ++ G+ V A + G      +R  +    VVVGTPG V D+++R+S+
Sbjct:   40 GGTLQDGQYEVEV-KLSDIQGDETSPLYS--VETFEQLGIDASILKGLYAMNFKKPSKIQEKALPLLLRNPPTNMIAQSQSGTGKTAAFVITILSRLDFSKPTTPQALCLAPSRELARQIEGVIRSIGQFVDGLTVQAAIPGAV----ERNAKVNAMVVVGTPGTVMDLIKRRSI 207          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 54/144 (37.50%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  233 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            + F+   L+  LL GI+  G+EKPS IQ+  I     G D++ +A++GTGK+  +   +L++LD      QA+V+ PTRELA Q+ ++   +  ++ GVKV A  GGT++ +D   L   VHVV+ TPGR+ D++++   + D+
Sbjct:   95 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH 238          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 53/139 (38.13%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  ++   R L+   H++VGTPGR+ D + R++LR
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLR 141          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 53/139 (38.13%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  ++   R L+   H++VGTPGR+ D + R++LR
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLR 141          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 53/139 (38.13%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  ++   R L+   H++VGTPGR+ D + R++LR
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLR 141          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 53/139 (38.13%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  ++   R L+   H++VGTPGR+ D + R++LR
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLR 141          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 53/139 (38.13%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  ++   R L+   H++VGTPGR+ D + R++LR
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLR 141          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 53/139 (38.13%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            +F  +GL ++LL+ + + GFE+ + IQ   I    +G D+I QAQ+GTGKTA F   +L ++D      Q +V+APTRELA Q+ + +  +G +  V++    GG  ++   R L+   H++VGTPGR+ D + R++LR
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLR 141          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.261e-22
Identity = 53/144 (36.81%), Postives = 88/144 (61.11%), Query Frame = 2
Query:  233 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            + F+   L+  LL GI+  G+EKPS IQ+  I     G D++ +A++GTGK+  +   +L++LD      QA+V+ PTRELA Q+ ++   +  ++ G KV A  GGT++ +D   L   VHVV+ TPGR+ D++++   + D+
Sbjct:   96 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH 239          
The following BLAST results are available for this feature:
BLAST of CF832255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP5_USTMA2.496e-2240.71ATP-dependent RNA helicase DBP5 OS=Ustilago maydis... [more]
DBP5_BOTFB3.259e-2237.14ATP-dependent RNA helicase dbp5 OS=Botryotinia fuc... [more]
DDX6_XENTR5.560e-2237.50Probable ATP-dependent RNA helicase ddx6 OS=Xenopu... [more]
CSHA_BACHK5.560e-2238.13DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCZ5.560e-2238.13DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCR5.560e-2238.13DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACC15.560e-2238.13DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAN5.560e-2238.13DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAH5.560e-2238.13DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
DDX6_MOUSE7.261e-2236.81Probable ATP-dependent RNA helicase DDX6 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832255 ID=CF832255; Name=CF832255; organism=Citrus sinensis; type=EST; length=661bp
TTGGAAACCCTAACAACTATTTTCTCTCAAATCAATCCTCTCCTTCTCTT
TGAAGAAAAAAGAAAACCAACTCTTTCTCTCGGATTTTAATCACCATCAT
CAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTTGA
TGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGGGC
AAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAATG
GGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCCTATGGGTTTGAGAA
GCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACTTG
ACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCTGC
TCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCT
GGTATTGGCACCCACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGA
GGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGG
ACAAGTGTTCACGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGT
TGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGCCGACAGTCTTTAC
GCCCTGATTAC
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