CF832255

Overview
NameCF832255
Unique NameCF832255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 6.302e-50
Identity = 99/151 (65.56%), Postives = 118/151 (78.15%), Query Frame = 2 
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVH-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+V  E Q++     H++VGTPGRVFDML R+ L P Y
Sbjct:   17 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 167
[Close]
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.302e-50
Identity = 99/151 (65.56%), Postives = 118/151 (78.15%), Query Frame = 2 
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVH-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+V  E Q++     H++VGTPGRVFDML R+ L P Y
Sbjct:   25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 175
[Close]
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.302e-50
Identity = 99/151 (65.56%), Postives = 118/151 (78.15%), Query Frame = 2 
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVH-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+V  E Q++     H++VGTPGRVFDML R+ L P Y
Sbjct:   25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 175
[Close]
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.302e-50
Identity = 99/151 (65.56%), Postives = 118/151 (78.15%), Query Frame = 2 
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVH-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+V  E Q++     H++VGTPGRVFDML R+ L P Y
Sbjct:   25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 175
[Close]
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.302e-50
Identity = 99/151 (65.56%), Postives = 118/151 (78.15%), Query Frame = 2 
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVH-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+V  E Q++     H++VGTPGRVFDML R+ L P Y
Sbjct:   25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 175
[Close]
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.302e-50
Identity = 99/151 (65.56%), Postives = 118/151 (78.15%), Query Frame = 2 
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVH-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            ++++E+ DSFD M L E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+V  E Q++     H++VGTPGRVFDML R+ L P Y
Sbjct:   25 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 175
[Close]
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.231e-50
Identity = 94/149 (63.09%), Postives = 119/149 (79.87%), Query Frame = 2 
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658
            ++YDE  DSFD M L+  LLRGIYAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF   +LQ++D  +  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GGTSV +D + LQ G  V+VGTPGRV DM++R+ L+ D
Sbjct:   17 SNYDETVDSFDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQDGPQVIVGTPGRVHDMIQRRILKTD 165
[Close]
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A2_RAT (Eukaryotic initiation factor 4A-II OS=Rattus norvegicus GN=Eif4a2 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.231e-50
Identity = 99/151 (65.56%), Postives = 120/151 (79.47%), Query Frame = 2 
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDY 661
            ++++E+ D+FD M L+E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQL+    + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+V  + + LQA   H+VVGTPGRVFDML R+ L P +
Sbjct:   26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 176
[Close]
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A2_PONAB (Eukaryotic initiation factor 4A-II OS=Pongo abelii GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.231e-50
Identity = 99/151 (65.56%), Postives = 120/151 (79.47%), Query Frame = 2 
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDY 661
            ++++E+ D+FD M L+E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQL+    + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+V  + + LQA   H+VVGTPGRVFDML R+ L P +
Sbjct:   26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 176
[Close]
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A2_MOUSE (Eukaryotic initiation factor 4A-II OS=Mus musculus GN=Eif4a2 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.231e-50
Identity = 99/151 (65.56%), Postives = 120/151 (79.47%), Query Frame = 2 
Query:  212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDY 661
            ++++E+ D+FD M L+E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQL+    + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+V  + + LQA   H+VVGTPGRVFDML R+ L P +
Sbjct:   26 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 176
The following BLAST results are available for this feature:
BLAST of CF832255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_RABIT6.302e-5065.56Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PANTR6.302e-5065.56Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MOUSE6.302e-5065.56Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA6.302e-5065.56Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN6.302e-5065.56Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN6.302e-5065.56Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A_CHAGB8.231e-5063.09ATP-dependent RNA helicase eIF4A OS=Chaetomium glo... [more]
IF4A2_RAT8.231e-5065.56Eukaryotic initiation factor 4A-II OS=Rattus norve... [more]
IF4A2_PONAB8.231e-5065.56Eukaryotic initiation factor 4A-II OS=Pongo abelii... [more]
IF4A2_MOUSE8.231e-5065.56Eukaryotic initiation factor 4A-II OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832255 ID=CF832255; Name=CF832255; organism=Citrus sinensis; type=EST; length=661bp
TTGGAAACCCTAACAACTATTTTCTCTCAAATCAATCCTCTCCTTCTCTT
TGAAGAAAAAAGAAAACCAACTCTTTCTCTCGGATTTTAATCACCATCAT
CAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTTGA
TGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGGGC
AAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAATG
GGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCCTATGGGTTTGAGAA
GCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACTTG
ACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCTGC
TCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCT
GGTATTGGCACCCACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGA
GGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGG
ACAAGTGTTCACGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGT
TGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGCCGACAGTCTTTAC
GCCCTGATTAC
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