CF832280

Overview
NameCF832280
Unique NameCF832280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832280_ssr237 microsatellite CF832280_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:510..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PERN_ARMRU (Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.155e-38
Identity = 86/170 (50.59%), Postives = 108/170 (63.53%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGA--DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            NLP PF+ LD + + F  VGLN   D+VALSGAHTFG+A+C  F  RL++F   G PD TL+ T L  L+ +CP GGNG   A  D  + D FDN YF NL   KGLL SDQ LF +  A   T  +VE + R+Q  FF++F  SMIRMG+L  + G  GE+R NCR +N
Sbjct:  161 NLPSPFEPLDAIIAKFAAVGLN-VTDVVALSGAHTFGQAKCDLFSNRLFNFTGAGTPDSTLETTLLSDLQTVCPIGGNGNKTAPLDRNSTDAFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKRLVEAYSRSQYLFFRDFTCSMIRMGSL--VNGASGEVRTNCRVIN 327          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER59_ARATH (Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 9.779e-38
Identity = 83/170 (48.82%), Postives = 108/170 (63.53%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGA--DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            NLP PF+ LD + + F  V LN   D+VALSGAHTFG+A+C  F  RL++F   G PD TL+ + L  L+ +CP GGN  + A  D +T D FDN YF NL   KGLL SDQ LF +  A   T  +VE + R+Q+ FF++F  +MIRMGN+    G  GE+R NCR +N
Sbjct:  161 NLPSPFEPLDAIIAKFVAVNLNIT-DVVALSGAHTFGQAKCAVFSNRLFNFTGLGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRTNCRVIN 327          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER49_ARATH (Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.853e-37
Identity = 78/171 (45.61%), Postives = 107/171 (62.57%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            +N N+P P +T   + S F   GL D  DLVALSG+HT G ++C  FR RLY+ +  G PD TL+ +F   LR+ CP+ G   +L+  D+ +   FDN YF NL   KGLL SDQ LF +    +  +V+ +  +Q  FF+ F  SMI+MGN+ PLTG+ GEIR NCR++N
Sbjct:  162 SNNNIPAPNNTFQTILSKFNRQGL-DITDLVALSGSHTIGFSRCTSFRQRLYNQSGNGSPDMTLEQSFAANLRQRCPKSGGDQILSVLDIISAASFDNSYFKNLIENKGLLNSDQVLF-SSNEKSRELVKKYAEDQGEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKIN 330          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER72_ARATH (Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.409e-36
Identity = 80/171 (46.78%), Postives = 106/171 (61.99%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            +N ++P P +T   + + F+  GL D +DLV+LSG+HT G ++C  FR RLY+ +  GKPD TL   +   LR+ CP+ G    L   D  TP  FDN YF NL   KGLL SD+ LF T    +  +VE +  NQ AFF+ F  SM++MGN+ PLTG +GEIR  CRRVN
Sbjct:  165 SNNDIPAPNNTFQTILTKFKRQGL-DLVDLVSLSGSHTIGNSRCTSFRQRLYNQSGNGKPDMTLSQYYATLLRQRCPRSGGDQTLFFLDFATPFKFDNHYFKNLIMYKGLLSSDEILF-TKNKQSKELVELYAENQEAFFEQFAKSMVKMGNISPLTGAKGEIRRICRRVN 333          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER15_ARATH (Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.153e-36
Identity = 74/173 (42.77%), Postives = 108/173 (62.43%), Query Frame = -1
Query:  267 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 785
            +N N+P P +T + + + F N GL D  D+VALSG+HT G ++C  FR RLY+ +  G PD TL+ ++   LR+ CP+ G    L+  D+ +   FDN YF NL    GLL SD+ LF +    +  +V+ +  +Q  FF+ F  SMI+MGN+ PLTG+ GEIR NCR++N +
Sbjct:  168 SNNNIPAPNNTFNTIVTRFNNQGL-DLTDVVALSGSHTIGFSRCTSFRQRLYNQSGNGSPDRTLEQSYAANLRQRCPRSGGDQNLSELDINSAGRFDNSYFKNLIENMGLLNSDEVLF-SSNEQSRELVKKYAEDQEEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKINNS 338          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.039e-35
Identity = 80/171 (46.78%), Postives = 104/171 (60.82%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            AN +LPGP  +  +L+++F    LN  +D+VALSGAHT G+AQC  FR R+Y        D  ++  F   L+  CPQ G    LAN D  TP+ FDN Y++NL  +KGLL SDQ LF     D    V +F  N  AF   F T+MI+MGN+ PLTG QG+IRL+C +VN
Sbjct:  150 ANSDLPGPSSSRSQLEAAFLKKNLNT-VDMVALSGAHTIGKAQCSNFRTRIYG------GDTNINTAFATSLKANCPQSGGNTNLANLDTMTPNAFDNAYYTNLLSQKGLLHSDQVLFNNETTDNT--VRNFASNAAAFSSAFTTAMIKMGNIAPLTGTQGQIRLSCSKVN 311          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER1_ARAHY (Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.039e-35
Identity = 82/171 (47.95%), Postives = 105/171 (61.40%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            AN +LP PF  L  L S+F N G   K +LV LSGAHT G+AQC  FR R+Y+ +N       +D T+ + L+  CP  G    L+ FDVTTP+ FDN Y+ NLR +KGLL SDQ+LF   G  T + V  +  N   F  +F  +MI+MGNL PLTG  G+IR NCR+ N
Sbjct:  156 ANSDLPAPFFNLSGLISAFSNKGFTTK-ELVTLSGAHTIGQAQCTAFRTRIYNESN-------IDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQLF--NGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 316          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER5_ARATH (Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.478e-35
Identity = 81/167 (48.50%), Postives = 108/167 (64.67%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            LPG  DTLD+L   F   GLN + DLVALSGAHT G++QC  FR RLY+ ++       +DA F    ++ CP  G  G LA  D+ TP+ FDN Y+ NL  +KGLL +DQ LF + GA T  IV ++ +N++ F  +F T+MI+MGN++PLTG+ GEIR  C  VN
Sbjct:  163 LPGFKDTLDQLSGLFSKKGLNTR-DLVALSGAHTIGQSQCFLFRDRLYENSSD------IDAGFASTRKRRCPTVGGDGNLAALDLVTPNSFDNNYYKNLMQKKGLLVTDQVLFGS-GASTDGIVSEYSKNRSKFAADFATAMIKMGNIEPLTGSNGEIRKICSFVN 321          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.543e-35
Identity = 84/171 (49.12%), Postives = 106/171 (61.99%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            A  +LPGPFD L+ L SSF + GL+ + D+VALSGAHT G+AQC  FR R+Y  N T      +DA F    R+ CPQ G  G LA  D+ TP+ FDN YF NL  +KGLLQSDQ LF   G  T  IV ++  +  AF  +F  +MI+MG++ PL+G  G IR  C  VN
Sbjct:  161 AETDLPGPFDPLNRLISSFASKGLSTR-DMVALSGAHTIGQAQCFLFRDRIYS-NGTD-----IDAGFASTRRRQCPQEGENGNLAPLDLVTPNQFDNNYFKNLIQKKGLLQSDQVLF--NGGSTDNIVSEYSNSARAFSSDFAAAMIKMGDISPLSGQNGIIRKVCGSVN 322          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER2_ORYSJ (Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.322e-34
Identity = 83/173 (47.98%), Postives = 105/173 (60.69%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQ--GGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            AN +LP P  +L EL  +F   GL D  D+VALSGAHT G+AQCQ FR RLY+  N       +D++F   L+  CP+  G     LA  D TTP+ FD+ Y++NL   KGLL SDQ LF   G  T   V +F  N  AF   F  +M++MGN+ PLTG QG+IRLNC +VN
Sbjct:  152 ANTDLPAPSSSLAELIGNFSRKGL-DVTDMVALSGAHTIGQAQCQNFRDRLYNETN-------IDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLF--NGGSTDNTVRNFSSNTAAFNSAFTAAMVKMGNISPLTGTQGQIRLNCSKVN 314          
The following BLAST results are available for this feature:
BLAST of CF832280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PERN_ARMRU1.155e-3850.59Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 S... [more]
PER59_ARATH9.779e-3848.82Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=... [more]
PER49_ARATH4.853e-3745.61Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=... [more]
PER72_ARATH2.409e-3646.78Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=... [more]
PER15_ARATH9.153e-3642.77Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=... [more]
PER1_WHEAT2.039e-3546.78Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PER1_ARAHY2.039e-3547.95Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 ... [more]
PER5_ARATH3.478e-3548.50Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 ... [more]
PERX_NICSY4.543e-3549.12Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PER2_ORYSJ1.322e-3447.98Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832280 ID=CF832280; Name=CF832280; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTGAAACACAAACAAAAGTTTAATTAATCTCCTTT
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCCAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGC
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