CF832280

Overview
NameCF832280
Unique NameCF832280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832280_ssr237 microsatellite CF832280_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:510..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER25_ARATH (Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.849e-28
Identity = 71/173 (41.04%), Postives = 97/173 (56.07%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNA-----FFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            NLP P D++   K  F++ GL D  DLV L GAHT G+  C FFR RLY+F  TG  DPT+  +FL QL+ LCP  G+G      D+ +P  FD  +F NLR    +L+SDQ L W+  A+T A+V+ +           F   F  +MI+M ++   T   GE+R  C +VN
Sbjct:  159 NLPSPLDSVAVQKQKFQDKGL-DTHDLVTLLGAHTIGQTDCLFFRYRLYNFTVTGNSDPTISPSFLTQLKTLCPPNGDGSKRVALDIGSPSKFDESFFKNLRDGNAILESDQRL-WS-DAETNAVVKKYASRLRGLLGFRFDYEFGKAMIKMSSIDVKTDVDGEVRKVCSKVN 328          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER2_ARAHY (Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.153e-28
Identity = 72/172 (41.86%), Postives = 93/172 (54.07%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDF----GRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            NLP P D++D  K  F   GLN + DLV L G HT G ++CQFF  RL++FN T   DP +D +F+  L+ LCPQ          D  +   FD  YFSNLR R+G+LQSDQ L+  P   T + V+ +    G     F   F  SM++M N+   TG  GEIR  C   N
Sbjct:  162 NLPAPSDSVDVQKQKFAAKGLNTQ-DLVTLVGGHTIGTSECQFFSNRLFNFNGTAAADPAIDPSFVSNLQALCPQNTGAANRVALDTGSQFKFDTSYFSNLRNRRGVLQSDQALWNDP--STKSFVQRYLGLRGFLGLTFNVEFGKSMVKMSNIGVKTGTDGEIRKICSAFN 330          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER57_ARATH (Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.378e-28
Identity = 73/168 (43.45%), Postives = 94/168 (55.95%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFK-NFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            LPGP  ++    S F N G+N   D VAL GAHT G+  C  F  R+  F  TG+PDP++D   +  LR  C         A  D ++P  FDN++F  +R R+G+LQ DQ L   P   T  IV  +  N NAFFK  FV +M++MG +  LTG  GEIR NCRR N
Sbjct:  154 LPGPTISVSGAVSLFTNKGMNT-FDAVALLGAHTVGQGNCGLFSDRITSFQGTGRPDPSMDPALVTSLRNTC----RNSATAALDQSSPLRFDNQFFKQIRKRRGVLQVDQRLASDP--QTRGIVARYA-NNNAFFKRQFVRAMVKMGAVDVLTGRNGEIRRNCRRFN 313          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.044e-27
Identity = 69/175 (39.43%), Postives = 98/175 (56.00%), Query Frame = -1
Query:  267 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGG-----VLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 776
            +LP P  ++DE  + F++ GL D LD+  L GAH+ G+  C +   RLY+F NTGKPDPT++ T + QLR LCP     G     V  N D  + + F + Y+S +     +L+ DQEL      D+  I ++F      F K+F  +M RMG++  LTG  GEIR +CR  N N
Sbjct:  166 DLPSPSISVDESLAYFKSKGL-DVLDMTTLLGAHSMGKTHCSYVVDRLYNFKNTGKPDPTMNTTLVSQLRYLCPPRTQKGQTDPLVYLNPDSGSSNRFTSSYYSRVLSHNAVLRVDQELL--NNDDSKEITQEFASGFEDFRKSFALAMSRMGSINVLTGTAGEIRRDCRVTNAN 337          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER28_ARATH (Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 70/171 (40.94%), Postives = 94/171 (54.97%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            AN+ LP PF +++ + S F N G+N   D VAL GAHT G A C  F  R+ +F  TG PDP++D T   +LR  C   G    L      TP  FDN +F  +R RKG+L  DQ +   P   T+ +V  +  N   F + F  +M++MG +  LTG+ GEIR NCR  N
Sbjct:  154 ANEILPPPFISVEGMLSFFGNKGMN-VFDSVALLGAHTVGIASCGNFVDRVTNFQGTGLPDPSMDPTLAGRLRNTCAVPGGFAALDQSMPVTPVSFDNLFFGQIRERKGILLIDQLIASDPA--TSGVVLQYASNNELFKRQFAIAMVKMGAVDVLTGSAGEIRTNCRAFN 321          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER17_ARATH (Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.947e-27
Identity = 68/167 (40.72%), Postives = 99/167 (59.28%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            +P P      L   F    L+ K D+VALSG+H+ G+ +C     RLY+ + +GKPDP L+ ++ ++L KLCP GG+  V  + D  TP VFDN+YF +L   +G L SDQ L+      T   V+ F  +Q+ FF+ F   M+++G+L+  +G  GEIR NCR VN
Sbjct:  159 MPSPRANATFLIDLFERFNLSVK-DMVALSGSHSIGQGRCFSIMFRLYNQSGSGKPDPALEPSYRKKLDKLCPLGGDENVTGDLD-ATPQVFDNQYFKDLVSGRGFLNSDQTLY--TNLVTREYVKMFSEDQDEFFRAFAEGMVKLGDLQ--SGRPGEIRFNCRVVN 319          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER16_ARATH (Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.947e-27
Identity = 67/168 (39.88%), Postives = 99/168 (58.93%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            +LP P   LD+L + F   GL+ + D++ALSGAHT G A C  F  R+Y+F+     DPTL+  +  QLR++CP   +  +  N D T+P+ FDN YF NL+   GL  SDQ LF      + + V  F  ++  F + F++++ ++G +   TGN GEIR +C RVN
Sbjct:  159 SLPQPSFKLDQLNTMFARHGLS-QTDMIALSGAHTIGFAHCGKFSKRIYNFSPKRPIDPTLNIRYALQLRQMCPIRVDLRIAINMDPTSPNTFDNAYFKNLQKGMGLFTSDQVLF--SDERSRSTVNSFASSEATFRQAFISAITKLGRVGVKTGNAGEIRRDCSRVN 323          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.766e-27
Identity = 73/173 (42.20%), Postives = 102/173 (58.96%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLD-ATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQEL-FWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            A   LP P  T+  L S+F+N+GL+ + D+VALSG HT G+A+C  F  RL     TG+P    D   FL+ L++LC   G    +   D+ TP  FDN+Y+ NL   +GLL SDQ L    PG  T AIVE +  +Q+ FF++F  +M++MG +    G+  EIR NCR +N
Sbjct:  182 ATNGLPSPNSTVSTLISTFQNLGLS-QTDMVALSGGHTLGKARCTSFTARLQPLQ-TGQPANHGDNLEFLESLQQLCSTVGPSVGITQLDLVTPSTFDNQYYVNLLSGEGLLPSDQALAVQDPG--TRAIVETYATDQSVFFEDFKNAMVKMGGIP--GGSNSEIRKNCRMIN 348          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER62_ARATH (Peroxidase 62 OS=Arabidopsis thaliana GN=PER62 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 71/170 (41.76%), Postives = 96/170 (56.47%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVAL-SGAHTFGRAQCQFFRGRLYDFNNTGKP-DPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            NLP P D+L   +  F    LN + DLV L  G HT G A C F   R+  FN++G   DPT+D TF+ QL++LCPQ G+G    + D  + + FD  YF NL   +G+LQSD  L+ +P   T +IV++F   +  F   F  SM++M N+   TG  GEIR  C  VN
Sbjct:  155 NLPSPSDSLAIQQRKFSAFRLNTR-DLVTLVGGGHTIGTAACGFITNRI--FNSSGNTADPTMDQTFVPQLQRLCPQNGDGSARVDLDTGSGNTFDTSYFINLSRNRGILQSDHVLWTSPA--TRSIVQEFMAPRGNFNVQFARSMVKMSNIGVKTGTNGEIRRVCSAVN 319          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER73_ARATH (Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.260e-26
Identity = 71/170 (41.76%), Postives = 95/170 (55.88%), Query Frame = -1
Query:  273 NQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 782
            N NLPGP + + EL   F    L  + D++ALS AHT G A C     R+Y+FN T   DPTL+  + ++L+  CP+  +  +  N D TTP  FDN YF NL+  KGL  SDQ LF T G  +   V D+ +N  AF K FVT+M ++G +   T   G IR +C   N
Sbjct:  163 NGNLPGPNNKVTELNKLFAKNKLTQE-DMIALSAAHTLGFAHCGKVFNRIYNFNLTHAVDPTLNKAYAKELQLACPKTVDPRIAINMDPTTPRQFDNIYFKNLQQGKGLFTSDQVLF-TDGR-SKPTVNDWAKNSVAFNKAFVTAMTKLGRVGVKTRRNGNIRRDCGAFN 329          
The following BLAST results are available for this feature:
BLAST of CF832280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER25_ARATH1.849e-2841.04Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=... [more]
PER2_ARAHY3.153e-2841.86Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 ... [more]
PER57_ARATH5.378e-2843.45Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=... [more]
PER61_ARATH2.044e-2739.43Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER28_ARATH2.669e-2740.94Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=... [more]
PER17_ARATH5.947e-2740.72Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=... [more]
PER16_ARATH5.947e-2739.88Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=... [more]
PER40_ARATH7.766e-2742.20Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]
PER62_ARATH1.014e-2641.76Peroxidase 62 OS=Arabidopsis thaliana GN=PER62 PE=... [more]
PER73_ARATH2.260e-2641.76Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832280 ID=CF832280; Name=CF832280; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTGAAACACAAACAAAAGTTTAATTAATCTCCTTT
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCCAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGC
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