CF832280

Overview
NameCF832280
Unique NameCF832280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832280_ssr237 microsatellite CF832280_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:510..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER35_ARATH (Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.619e-24
Identity = 65/168 (38.69%), Postives = 90/168 (53.57%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            NLPGP D +D+L + F    L  + D++ALS AHT G A C     R++ FN     DPTL+  +  +L+K CP+  +  +  N D  TP  FDN YF NL+  KGL  SDQ LF T G  +   V  +  N  AF + FV +M ++G +     + G IR +C   N
Sbjct:  165 NLPGPSDNVDKLNALFTKNKLTQE-DMIALSAAHTLGFAHCGKVFKRIHKFNGINSVDPTLNKAYAIELQKACPKNVDPRIAINMDPVTPKTFDNTYFKNLQQGKGLFTSDQVLF-TDGR-SRPTVNAWASNSTAFNRAFVIAMTKLGRVGVKNSSNGNIRRDCGAFN 329          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER56_ARATH (Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.712e-24
Identity = 65/169 (38.46%), Postives = 88/169 (52.07%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAA-IVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            NLP PF+ +  L + F++ GL DK DLV LSG HT G   C     RLY+F   G  DP LD  +  +LR  C        L   D  +   FD  YF  +  R+GL QSD  L      +T + +++    + + FFK+F  SM++MG +  LTG  GE+R  CR VN
Sbjct:  165 NLPSPFNNISSLITQFQSKGL-DKKDLVVLSGGHTIGNGHCPQITNRLYNFTGKGDSDPNLDTEYAVKLRGKCKPTDTTTAL-EMDPGSFKTFDESYFKLVSQRRGLFQSDAALL--DNQETKSYVLKSLNSDGSTFFKDFGVSMVKMGRIGVLTGQVGEVRKKCRMVN 329          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER69_ARATH (Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.371e-23
Identity = 67/171 (39.18%), Postives = 91/171 (53.22%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVE---DFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            NLPGP D++ + K  F    LN  LDLV L G HT G A C   RGR  +FN TG+PDP++D +F+  +   CPQ  NGG     D  + D FD  +   +   + +LQSD  L+  P  +T AI+E      R    F   F  SM++M  ++  TG+ GEIR  C  +N
Sbjct:  166 NLPGPSDSVAKQKQDFAAKTLNT-LDLVTLVGGHTIGTAGCGLVRGRFVNFNGTGQPDPSIDPSFVPLILAQCPQ--NGGTRVELDEGSVDKFDTSFLRKVTSSRVVLQSDLVLWKDP--ETRAIIERLLGLRRPSLRFGTEFGKSMVKMSLIEVKTGSDGEIRRVCSAIN 331          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER2_ZINEL (Basic peroxidase OS=Zinnia elegans GN=POD3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.790e-23
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = -1
Query:  285 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNC 785
            A  +LP     L +L S+F N GLN + ++VALSG+HT G+A+C  FRGR+Y  N+T + +P     F + L + CP  GN   L   D+ TP+ FDN Y+ NL   +GLL SDQ LF     D  +IV ++  N   F  +F  +M++M  +  +TG  G +R  C
Sbjct:  160 AATDLPRGNMVLSQLISNFANKGLNTR-EMVALSGSHTLGQARCIRFRGRIY--NSTLRIEPN----FNRSLSQACPPTGNDATLRPLDLVTPNSFDNNYYRNLVTSRGLLISDQVLFNADSTD--SIVTEYVNNPATFAADFAAAMVKMSEIGVVTGTSGIVRTLC 317          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER1_ZINEL (Basic peroxidase OS=Zinnia elegans GN=POD1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.790e-23
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = -1
Query:  285 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNC 785
            A  +LP     L +L S+F N GLN + ++VALSG+HT G+A+C  FRGR+Y  N+T + +P     F + L + CP  GN   L   D+ TP+ FDN Y+ NL   +GLL SDQ LF     D  +IV ++  N   F  +F  +M++M  +  +TG  G +R  C
Sbjct:  160 AATDLPRGNMVLSQLISNFANKGLNTR-EMVALSGSHTLGQARCIRFRGRIY--NSTLRIEPN----FNRSLSQACPPTGNDATLRPLDLVTPNSFDNNYYRNLVTSRGLLISDQVLFNADSTD--SIVTEYVNNPATFAADFAAAMVKMSEIGVVTGTSGIVRTLC 317          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER55_ARATH (Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.338e-23
Identity = 65/167 (38.92%), Postives = 89/167 (53.29%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            LP P   +  L   F + GL+   D++ALSGAHT G + C  F  RL++F+     DPT+D  + QQL + C    N   + + D+T+ D FDN Y+ NL  RKGL  SDQ LF      + A V  F  N   F+  F ++M  +G +    GNQGEIR +C   N
Sbjct:  168 LPEPGLDVRGLVQIFASNGLS-LTDMIALSGAHTIGSSHCNRFANRLHNFSTFMPVDPTMDPVYAQQLIQAC-SDPNPDAVVDIDLTSRDTFDNSYYQNLVARKGLFTSDQALF--NDLSSQATVVRFANNAEEFYSAFSSAMRNLGRVGVKVGNQGEIRRDCSAFN 330          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER70_ARATH (Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.054e-23
Identity = 67/174 (38.51%), Postives = 92/174 (52.87%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFF---KNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            +N  LPGP D++   K  F    LN + DLV L+  HT G A C  FR R ++++NTG PDPT+  +F+  ++  CP  G+       D  + D FD  Y +NL+  +GLL+SDQ L WT   +T  IVE     +  F      F  SM +M  ++  TG  GEIR  C  VN
Sbjct:  160 SNVILPGPTDSVAVQKLRFAEKNLNTQ-DLVVLAAGHTIGTAGCIVFRDRFFNYDNTGSPDPTIAPSFVPLIQAQCPLNGDPATRVVLDTGSGDQFDTSYLNNLKNGRGLLESDQVL-WT-NLETRPIVERLLGLRFPFLIFGLEFARSMTKMSQIEIKTGLDGEIRRVCSAVN 330          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER66_ARATH (Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.989e-23
Identity = 66/170 (38.82%), Postives = 94/170 (55.29%), Query Frame = -1
Query:  273 QNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDV-TTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 779
            +NLP P   + +L  SF   GL+ K D+V LSG HT G + C  F  RL +F+     DP+++  F Q L+K CP+  N G  A   + +T  VFDN Y+  +   KG+  SDQ L     + T  IVE F ++Q AFF+ F  SM+++GN        G++R+N R VN
Sbjct:  158 RNLPPPTFNVSQLIQSFAARGLSVK-DMVTLSGGHTIGFSHCSSFESRLQNFSKFHDIDPSMNYAFAQTLKKKCPRTSNRGKNAGTVLDSTSSVFDNVYYKQILSGKGVFGSDQALL--GDSRTKWIVETFAQDQKAFFREFAASMVKLGNFG--VKETGQVRVNTRFVN 322          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER43_ARATH (Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.516e-22
Identity = 64/174 (36.78%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  273 QNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFF-----KNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 779
            +++P   D+++ LK+ F   GLN K DLV LS AHT G   C F   RLYDF   G+PDPT++ TFL +L   CPQ G+  V    D  +  +FD +   N++    +LQ+D  L+      T  +V+ +    N FF      +FV ++++MG +   TG +GEIR  C   N
Sbjct:  156 KDMPEVSDSIEILKAKFMQKGLNAK-DLVLLSAAHTIGTTACFFMSKRLYDFLPGGQPDPTINPTFLPELTTQCPQNGDINVRLPIDRFSERLFDKQILQNIKDGFAVLQTDAGLY--EDVTTRQVVDSYLGMLNPFFGPTFESDFVKAIVKMGKIGVKTGFKGEIRRVCSAFN 326          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER7_ARATH (Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.585e-22
Identity = 65/175 (37.14%), Postives = 94/175 (53.71%), Query Frame = -1
Query:  264 QNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFK-NFVTSMIRMGNLKPLTGNQ--GEIRLNCRRVNGNS 779
            + +P     +  L  +F++ GLN  LDLV LSGAHT G+A C   + RLY++N T   DP++DA +   L++ C          + D  TP VFDN+Y+ NL+   G+L +DQEL   P   TA +V+ F       F+  F  SM ++ N+  LTG    GEIR  C + N  +
Sbjct:  180 EKVPSGRRDVTALLETFQSYGLN-VLDLVVLSGAHTIGKASCGTIQSRLYNYNATSGSDPSIDAKYADYLQRRCRWASE---TVDLDPVTPAVFDNQYYINLQKHMGVLSTDQELVKDP--RTAPLVKTFAEQSPQIFRQQFAVSMAKLVNVGVLTGEDRVGEIRKVCSKSNSRA 348          
The following BLAST results are available for this feature:
BLAST of CF832280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER35_ARATH1.619e-2438.69Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=... [more]
PER56_ARATH4.712e-2438.46Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=... [more]
PER69_ARATH1.371e-2339.18Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=... [more]
PER2_ZINEL1.790e-2339.52Basic peroxidase OS=Zinnia elegans GN=POD3 PE=1 SV... [more]
PER1_ZINEL1.790e-2339.52Basic peroxidase OS=Zinnia elegans GN=POD1 PE=1 SV... [more]
PER55_ARATH2.338e-2338.92Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=... [more]
PER70_ARATH3.054e-2338.51Peroxidase 70 OS=Arabidopsis thaliana GN=PER70 PE=... [more]
PER66_ARATH3.989e-2338.82Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=... [more]
PER43_ARATH1.516e-2236.78Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=... [more]
PER7_ARATH2.585e-2237.14Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832280 ID=CF832280; Name=CF832280; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTGAAACACAAACAAAAGTTTAATTAATCTCCTTT
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCCAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGC
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