CF832280

Overview
NameCF832280
Unique NameCF832280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832280_ssr237 microsatellite CF832280_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:510..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER64_ARATH (Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.760e-22
Identity = 67/171 (39.18%), Postives = 92/171 (53.80%), Query Frame = -1
Query:  276 QNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGG---NGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRV 779
            + LP P   + +L+ +F   GL+   DLVALSG HT G A C  F+ RL+ FN   + DPTL+ +F  +L  +CP      N G  +N D T    FDN Y+  L   K L  SD+ L   P   T  +V  +  +   F + FV SMI+M +   ++GN  E+RLNCRRV
Sbjct:  155 RQLPAPTFNISQLRQNFGQRGLSMH-DLVALSGGHTLGFAHCSSFQNRLHKFNTQKEVDPTLNPSFAARLEGVCPAHNTVKNAG--SNMDGTVTS-FDNIYYKMLIQGKSLFSSDESLLAVP--STKKLVAKYANSNEEFERAFVKSMIKMSS---ISGNGNEVRLNCRRV 316          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER39_ARATH (Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.676e-21
Identity = 63/172 (36.63%), Postives = 87/172 (50.58%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLR-KLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            A  N+P PF     L + F N GL+ K DLV LSGAHT G + C  F  RL++F   G  DP+LD+ +   L+ + C    +       D  + + FD  Y+  +  R+GL +SD  L   P A  A +    G ++  FF  F  SM +MG +   TG+ GEIR  C  VN
Sbjct:  157 AMNNIPPPFGNFTTLITLFGNQGLDVK-DLVLLSGAHTIGVSHCSSFSNRLFNFTGVGDQDPSLDSEYADNLKSRRCLSIADNTTKVEMDPGSRNTFDLSYYRLVLKRRGLFESDAALTMNPAA-LAQVKRFAGGSEQEFFAEFSNSMEKMGRIGVKTGSDGEIRRTCAFVN 326          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER30_ARATH (Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.676e-21
Identity = 63/169 (37.28%), Postives = 87/169 (51.48%), Query Frame = -1
Query:  285 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLR-KLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDF-GRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNC 785
            A  N+P P      L+  F+N GLN K DLV LSGAHT G + C     RLY+F+ T K DP+LD+ +   L+   C    +   +   D  +   FD  Y+  +  R+GL QSD  L  T  + T  ++ D    ++  FFK F  SM +MG +K  TG+ G IR  C
Sbjct:  159 ATNNIPPPTSNFTTLQRLFKNQGLNLK-DLVLLSGAHTIGVSHCSSMNTRLYNFSTTVKQDPSLDSQYAANLKANKCKSLNDNSTILEMDPGSSRSFDLSYYRLVLKRRGLFQSDSAL--TTNSATLKVINDLVNGSEKKFFKAFAKSMEKMGRVKVKTGSAGVIRTRC 324          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER1_ARATH (Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.876e-21
Identity = 63/168 (37.50%), Postives = 89/168 (52.98%), Query Frame = -1
Query:  285 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELF----WTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNC 776
            NLP PF  +  LK +F N GLN K DLV LSG HT G + C     RLY+F   G  DP+++ +++++L++ CP       L N D  +   FD  YF  +  +KGL  SD  L           T AI+       ++F K+F  SM+++G ++ LTG  GEIR  C
Sbjct:  159 NLPSPFADIKTLKKNFANKGLNAK-DLVVLSGGHTIGISSCALVNSRLYNFTGKGDSDPSMNPSYVRELKRKCPPTDFRTSL-NMDPGSALTFDTHYFKVVAQKKGLFTSDSTLLDDIETKNYVQTQAILPPV---FSSFNKDFSDSMVKLGFVQILTGKNGEIRKRC 321          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER1_ORYSJ (Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PRX74 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.368e-21
Identity = 66/171 (38.60%), Postives = 87/171 (50.88%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDF---NNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRN-QNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            LP P     EL   F    L+ K DLV LS  HT G + C  F  RLY+F   +N    DPTL+  ++ +LR  C    +   L   D  +   FD  YF N+  R+GL  SD EL  T G   A +    G   ++ FF +F  SM++MG ++ LTG+QGEIR  C  VN
Sbjct:  158 LPPPTANFTELTQMFAAKNLDLK-DLVVLSAGHTIGTSHCFSFTDRLYNFTGLDNAHDIDPTLELQYMARLRSKCTSLQDNTTLVEMDPGSFKTFDLGYFKNVAKRRGLFHSDGELL-TNGFTRAYVQRHAGGGYKDEFFADFAASMVKMGGVEVLTGSQGEIRKKCNVVN 326          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER24_ARATH (Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.086e-20
Identity = 70/176 (39.77%), Postives = 90/176 (51.14%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGG---NGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLT-GNQ-GEIRLNCRRVN 785
            A ++LP        L+  F    L D +DLVALSGAHT G A C  F  RL +F   G  DP+L+ ++   L+  C       N   +   D T P  FD+ YF +L   KGL  SD  L   P   +AA +    +N  AF   F  SMI+M ++K LT G+Q GEIR NCR VN
Sbjct:  179 AARDLPSAGANFTTLQKLFAESDL-DVVDLVALSGAHTIGIAHCGVFGRRLLNFTGKGDTDPSLNPSYASFLKSECSDKSLRLNPSAVVGMDPTGPLAFDSGYFVSLLKNKGLFTSDAALLTDP---SAAHIASVFQNSGAFLAQFGRSMIKMSSIKVLTLGDQGGEIRKNCRLVN 350          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.128e-20
Identity = 59/169 (34.91%), Postives = 83/169 (49.11%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLR-KLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            N+P P   +  L++ F N GL+ K DLV LSGAHT G + C  F  RLY+F   G  DP LD+ +   L+ + CP   +   +   D  +   FD  Y+  +  R+GL QSD  L   P    + I      +  +FF  F  SM +MG +   TG+ G +R  C   N
Sbjct:  159 NIPPPTSNITNLQTLFANQGLDLK-DLVLLSGAHTIGVSHCSSFTNRLYNFTGRGGQDPALDSEYAANLKSRKCPSLNDNKTIVEMDPGSRKTFDLSYYQLVLKRRGLFQSDSALTTNP-TTLSNINRILTGSVGSFFSEFAKSMEKMGRINVKTGSAGVVRRQCSVAN 325          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 64/169 (37.87%), Postives = 86/169 (50.89%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            NLP    ++ ++ S F+  G   K +LVALSG HT G + C+ F  R++      K DP L+A F   L+ LC        +A F D  TP  FDN YF NL+   GLL SD  LF  P   T   VE +  NQ AFF++F  +M ++G +       GE+R  C   N
Sbjct:  162 NLPLANQSVPDMLSIFKKNGFTLK-ELVALSGGHTIGFSHCKEFSNRIFP-----KVDPELNAKFAGVLKDLCKNFETNKTMAAFLDPVTPGKFDNMYFKNLKRGLGLLASDHILFKDP--STRPFVELYANNQTAFFEDFARAMEKLGRVGVKGEKDGEVRRRCDHFN 322          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER63_ARATH (Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.569e-19
Identity = 63/168 (37.50%), Postives = 90/168 (53.57%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            LP P   + +L   F + G + + ++VALSGAHT G + C+ F  R+   N+TG      +  F   L+K C    N   ++ F DV TP+ FDN YF N+    GLL+SD  LF  P   T   VE + R+Q+ FF +F  +M ++     LTG +GEIR  C  +N
Sbjct:  169 LPLPSMQISKLIDQFSSRGFSVQ-EMVALSGAHTIGFSHCKEFTNRVNPNNSTG-----YNPRFAVALKKACSNSKNDPTISVFNDVMTPNKFDNMYFQNIPKGLGLLESDHGLFSDP--RTRPFVELYARDQSRFFNDFAGAMQKLSLHGVLTGRRGEIRRRCDAIN 328          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.569e-19
Identity = 64/170 (37.65%), Postives = 85/170 (50.00%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQ---GGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            +P   D+L  + S+F ++G+ D    VAL GAH+ GR  C     RLY        DPTLD ++   L+K CP      N  + +  D  TP V DN Y+ N+   KGLL  D EL   P   TA  V     + N F + F   +  +    PLTG+QGEIR +CR VN
Sbjct:  166 IPNHNDSLSSVISTFNSIGI-DVEATVALLGAHSVGRVHCVNLVHRLYP-----TIDPTLDPSYALYLKKRCPSPTPDPNAVLYSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDPR--TAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327          
The following BLAST results are available for this feature:
BLAST of CF832280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER64_ARATH5.760e-2239.18Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=... [more]
PER39_ARATH1.676e-2136.63Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=... [more]
PER30_ARATH1.676e-2137.28Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=... [more]
PER1_ARATH4.876e-2137.50Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=... [more]
PER1_ORYSJ6.368e-2138.60Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PR... [more]
PER24_ARATH1.086e-2039.77Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=... [more]
PER3_ARATH4.128e-2034.91Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]
PER41_ARATH5.391e-2037.87Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER63_ARATH1.569e-1937.50Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=... [more]
PER21_ARATH1.569e-1937.65Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832280 ID=CF832280; Name=CF832280; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTGAAACACAAACAAAAGTTTAATTAATCTCCTTT
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCCAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGC
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