CF832282

Overview
NameCF832282
Unique NameCF832282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8502 contig Csv1_Contig8502:660..1326. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832282 vs. ExPASy Swiss-Prot
Match: RBSK_HAEIN (Ribokinase OS=Haemophilus influenzae GN=rbsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 51/169 (30.18%), Postives = 88/169 (52.07%), Query Frame = -2
Query:  161 EAGALLLYDPNLRVPLWPSPEEA-REQIMSIWDKAEVIKVSDVELEFLPGSDKIDDESAL---SLWHPN-LKLLLVTLGEHGCRYYPKSFRGAVDAFHVNTVDTTGAGDAFVGAFLGKLVDDQSVFEDEPRLREILKFANACGAITTPKKGAIPALPTEFEALNLLKGA 652
            E  A +     ++V L P+P +   ++++S+ D   +I  ++ E E L G +  D++SA+   S++H   ++ +++TLG  G     K     +  F V  +DTT AGD F G F+  L++++S         E ++F  A  AI+  KKGA  ++PT  E L  L+ A
Sbjct:  148 ELAAQIAKKNGVKVVLNPAPAQILSDELLSLID---IITPNETEAEILTGVEVADEQSAVKAASVFHDKGIETVMITLGAKGVFVSRKGKSRIIKGFCVQAIDTTAAGDTFNGGFVTALLEEKS-------FDEAIRFGQAAAAISVTKKGAQSSIPTRQETLEFLEHA 306          
BLAST of CF832282 vs. ExPASy Swiss-Prot
Match: Y1459_PYRHO (Uncharacterized sugar kinase PH1459 OS=Pyrococcus horikoshii GN=PH1459 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 49/155 (31.61%), Postives = 83/155 (53.55%), Query Frame = -2
Query:  212 MKAAKE--AGALLLYDPNLRVPLWPSPEEAREQIMSIWDK-AEVIKVSDVELEFLPGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYPKSFRGAVDAFHVNTVDTTGAGDAFVGAFLGKLVDDQSVFEDEPRLREILKFANACGAITTPKKGA 667
            MK  K+    +L+ +D NLR+ LW   EE   +++    K A+++K S+ E+ +L     ++ + ++        L  +TLG  GCR         V +++VN +DTTGAGDAF+ A L  ++  + +      L ++ KFAN   A++T K+GA
Sbjct:  149 MKVIKKIKGSSLIAFDVNLRLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQG-VEVKGSM--------LTAITLGPKGCRLIKNETVVDVPSYNVNPLDTTGAGDAFMAALLVGILKLKGL-----DLLKLGKFANLVAALSTQKRGA 289          
The following BLAST results are available for this feature:
BLAST of CF832282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RBSK_HAEIN1.843e-1230.18Ribokinase OS=Haemophilus influenzae GN=rbsK PE=3 ... [more]
Y1459_PYRHO3.475e-1131.61Uncharacterized sugar kinase PH1459 OS=Pyrococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832282 ID=CF832282; Name=CF832282; organism=Citrus sinensis; type=EST; length=671bp
TTTTTTTTTTTTTTTTTCTTTAATACAGAAGAAACTTCTTTTCATTGAAT
TCAAAGCAACTTCCGTAAAAACAAAAAGAAAATTCAAAATACAAACAAAA
AGAAAATTCAAAATACAAACAAAAAAAAAAAATTGGAACTAATAATTTTG
TTTATTATTACGCTCCTTTGAGTAAGTTGAGAGCTTCAAACTCTGTGGGT
AGAGCTGGAATTGCTCCCTTCTTGGGGGTAGTGATGGCTCCACAGGCATT
TGCAAATTTCAATATCTCCCGCAACCTTGGTTCATCCTCAAAAACAGATT
GGTCATCAACAAGCTTCCCTAAAAAAGCACCAACAAATGCATCACCAGCG
CCGGTTGTATCTACTGTGTTCACATGAAAAGCATCCACTGCTCCTCTGAA
ACTCTTGGGGTAGTATCGGCAGCCATGCTCACCAAGGGTGACCAAAAGGA
GTTTCAAGTTGGGATGCCAAAGCGACAATGCTGATTCATCATCAATCTTG
TCACTCCCGGGGAGGAATTCAAGCTCCACATCACTGACTTTGATTACCTC
GGCCTTGTCCCAGATGCTCATTATCTGCTCGCGCGCCTCCTCCGGCGAGG
GCCACAACGGTACCCGGAGGTTGGGGTCGTATAAAAGAAGGGCTCCTGCT
TCCTTGGCTGCTTTCATTGCC
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