CF832284

Overview
NameCF832284
Unique NameCF832284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.166e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.166e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.166e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.166e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_CHILA (40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.166e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_BOVIN (40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.166e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.599e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   94 NFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.599e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   94 NFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.599e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   94 NFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.599e-19
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = -3 
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   94 NFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
The following BLAST results are available for this feature:
BLAST of CF832284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS23_PIG1.166e-1986.5440S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P... [more]
RS23_MOUSE1.166e-1986.5440S ribosomal protein S23 OS=Mus musculus GN=Rps23... [more]
RS23_ICTPU1.166e-1986.5440S ribosomal protein S23 OS=Ictalurus punctatus G... [more]
RS23_HUMAN1.166e-1986.5440S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
RS23_CHILA1.166e-1986.5440S ribosomal protein S23 OS=Chinchilla lanigera G... [more]
RS23_BOVIN1.166e-1986.5440S ribosomal protein S23 OS=Bos taurus GN=RPS23 P... [more]
RS23_YEAST2.599e-1986.5440S ribosomal protein S23 OS=Saccharomyces cerevis... [more]
RS23_SACCA2.599e-1986.5440S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA2.599e-1986.5440S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA2.599e-1986.5440S ribosomal protein S23 OS=Candida glabrata GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832284 ID=CF832284; Name=CF832284; organism=Citrus sinensis; type=EST; length=354bp
TTTTTTTTTTTTTTCACAAACCACTCAAGTAGAAGAGACAGATCCCTTTT
TACTAATAGTCTCAACAGAGGGAAAAAAACCAAAAACTTCTCTCAACAGC
AGTACATGATAAAGGAAAACAGTAATCAACGGGGATTAATGAAAATAAAG
TGCTAAAAAAAGAAAACATGGTGAAGTATCTTGAATCAGGAGTTTAGGAT
CTTGGTTTCTCCTTCTTCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGA
AACCTTGACAACCTTAAATCTAACACCAGGAATATCTCCCACAGCATGCC
CCTTTCGACCAAATCCTGCAATAAGTACCTCGTCATTTTCTTCAATGTAG
TTCA
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