CF832287

Overview
NameCF832287
Unique NameCF832287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.153e-17
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I  NDEVL+AGFGR GHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:   91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.153e-17
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I  NDEVL+AGFGR G A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:   93 LNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.118e-17
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN++  NDEVL+AGFGR G A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:   93 LNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.378e-17
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LNYI  NDEVL+AGFGR+GHAVGDIPGVRFK+VKV+ VSL ALF  KKE+PRS
Sbjct:   91 LNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143          
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.024e-17
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 1
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN++  NDEVL++GFGR+GHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:   91 LNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.951e-15
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN++  NDEVL++GFGR G A GDIPGVRFKVVKV+GV L ALF EKKEKPR+
Sbjct:   91 LNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143          
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.854e-15
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 150
            LN++  NDEVL+AG GR GHAVGDIPGVRFKVV V G+SLLALFK KKEK
Sbjct:   92 LNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141          
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.913e-14
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+   NDEVL+AGFGR  HAVGDIPGVRFKVV+++ VSLLAL+K  KE+P+S
Sbjct:   91 LNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143          
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.913e-14
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 153
            LNYI  ND+VL+AG GR+GH+VGDIPGVRFKVVKVS VSL+A+++  K+KP
Sbjct:   91 LNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141          
BLAST of CF832287 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.979e-11
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 LNYIY*NDEVLIAGFGRNGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 153
            + YI  NDEV + GFG+ G +VGDIPG+RFKV KV  VSL A+F  KKEKP
Sbjct:   88 VTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEKP 138          
The following BLAST results are available for this feature:
BLAST of CF832287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RS23_BRUMA3.153e-1777.3640S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_ASPFU3.153e-1783.0240S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_NEUCR4.118e-1781.1340S ribosomal protein S23 OS=Neurospora crassa GN=... [more]
RS23_CIOIN5.378e-1779.2540S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_CAEEL7.024e-1773.5840S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SCHPO2.951e-1573.5840S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS12_TETTH3.854e-1578.0040S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS23_GILMI1.913e-1469.8140S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS23_DICDI1.913e-1470.5940S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS23_ENCCU1.979e-1162.7540S ribosomal protein S23 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832287 ID=CF832287; Name=CF832287; organism=Citrus sinensis; type=EST; length=358bp
TTGAACTACATCTATTAAAATGACGAGGTACTTATTGCAGGATTTGGTCG
AAACGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCA
AGGTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAA
CCAAGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTT
TAGCACTTTATTTTCATTAATCCCCGTTGATTACTGTTTTCCTTTATCAT
GTACTGCTGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTAT
TAGTAAATTAGTATCTGTCTCTTCTACTTGAGTGGTTTGTTGAAAAAAAA
AAAAAAAA
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