CF832292

Overview
NameCF832292
Unique NameCF832292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832292 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.772e-33
Identity = 68/80 (85.00%), Postives = 76/80 (95.00%), Query Frame = 3
Query:  177 LNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 416
            L +MARKMK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    1 LTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 80          
BLAST of CF832292 vs. ExPASy Swiss-Prot
Match: TNNC2_MELGA (Troponin C, skeletal muscle OS=Meleagris gallopavo GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.315e-33
Identity = 69/134 (51.49%), Postives = 99/134 (73.88%), Query Frame = 3
Query:   15 AFSLFDKHVDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 407
            AF +FD    G I+TKELGTVMR LGQNPT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL   FR+FDK+ +GFI   EL  ++   GE +T+EE++++++++D + DG+I+++EF+K+M
Sbjct:   25 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEEIEDLMKDSDKNNDGRIDFDEFLKMM 158          
BLAST of CF832292 vs. ExPASy Swiss-Prot
Match: TNNC2_CHICK (Troponin C, skeletal muscle OS=Gallus gallus GN=TNNC2 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33
Identity = 68/134 (50.75%), Postives = 99/134 (73.88%), Query Frame = 3
Query:   15 AFSLFDKHVDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 407
            AF +FD    G I+TKELGTVMR LGQNPT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL   FR+FDK+ +GFI   EL  ++   GE +T+E+++++++++D + DG+I+++EF+K+M
Sbjct:   26 AFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 159          
BLAST of CF832292 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33
Identity = 66/125 (52.80%), Postives = 96/125 (76.80%), Query Frame = 3
Query:   42 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 407
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF832292 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33
Identity = 66/125 (52.80%), Postives = 96/125 (76.80%), Query Frame = 3
Query:   42 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 407
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF832292 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.156e-33
Identity = 66/125 (52.80%), Postives = 96/125 (76.80%), Query Frame = 3
Query:   42 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 407
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF832292 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.734e-33
Identity = 66/125 (52.80%), Postives = 96/125 (76.80%), Query Frame = 3
Query:   42 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 407
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF832292 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.734e-33
Identity = 66/125 (52.80%), Postives = 96/125 (76.80%), Query Frame = 3
Query:   42 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 407
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF832292 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.149e-32
Identity = 65/125 (52.00%), Postives = 96/125 (76.80%), Query Frame = 3
Query:   42 DGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 407
            DGCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     +EEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   33 DGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF832292 vs. ExPASy Swiss-Prot
Match: TNNC2_RABIT (Troponin C, skeletal muscle OS=Oryctolagus cuniculus GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.959e-32
Identity = 68/134 (50.75%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   15 AFSLFDKHVDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 407
            AF +FD    G I+ KELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FD++ +G+I A EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   23 AFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
The following BLAST results are available for this feature:
BLAST of CF832292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 457
Match NameE-valueIdentityDescription
CALM_STRPU1.772e-3385.00Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
TNNC2_MELGA2.315e-3351.49Troponin C, skeletal muscle OS=Meleagris gallopavo... [more]
TNNC2_CHICK5.156e-3350.75Troponin C, skeletal muscle OS=Gallus gallus GN=TN... [more]
TNNC1_PIG5.156e-3352.80Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE5.156e-3352.80Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_BOVIN5.156e-3352.80Troponin C, slow skeletal and cardiac muscles OS=B... [more]
TNNC1_RABIT6.734e-3352.80Troponin C, slow skeletal and cardiac muscles OS=O... [more]
TNNC1_HUMAN6.734e-3352.80Troponin C, slow skeletal and cardiac muscles OS=H... [more]
TNNC1_CHICK1.149e-3252.00Troponin C, slow skeletal and cardiac muscles OS=G... [more]
TNNC2_RABIT1.959e-3250.75Troponin C, skeletal muscle OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01K03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832292 ID=CF832292; Name=CF832292; organism=Citrus sinensis; type=EST; length=751bp
TCTGAGTTCAAGAGGCCTTCAGCTTGTTTGACAAGCATGTCGACGGTTGC
ATTACCACCAAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCC
CACTGAGGCTGAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTA
ATGGAACTATTGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATG
AAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGA
CAAGGATCAGAATGGTTTCATCTCAGCTGCTGAGCTGCGCCATGTGATGA
CAAACCTAGGAGAGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGG
GAAGCTGATGTTGATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAA
GGTTATGATGGCCAAGTAATGACCCCAACCCACCAATACTTATAAAATGG
GTTGACTAAATTATAAAGGGATTCCTAGTTTTCTCTTTTACAATTTTTAA
TTTGATAGTCATGAGGGTCAGGCTAAAGGAAGCAATGGTCTTTTAATGGT
GATGGGCCTGATGGTGTAGGAAGAATGTTGTCTCCCTCGTCAATATGTCT
TGTGACTCGCAAAACTTTTCGGTTTTTATTATTTTAGTTGTTCTGCTGTT
CTATGAATGTTGTTGTCTGTTTAATGTGTTTCATTAATTTCTGCCCTTGC
GATGTTTATTTTTCTTTTGGTCGAAATATGTATCCTATTTTATGTATCAA
A
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