CF832293

Overview
NameCF832293
Unique NameCF832293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:692..1400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CML10_ARATH (Calmodulin-like protein 10 OS=Arabidopsis thaliana GN=CML10 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.033e-37
Identity = 81/124 (65.32%), Postives = 99/124 (79.84%), Query Frame = -2
Query:  337 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 708
            G ITT+E G VMRSLG N T+AELQ+ IN+ D DG+GTI+F EFL  MA   KDT SE++LK+ FR+FD D+NGFISAAE+R+V T L  K TDEE+DE+I+ ADVDGDGQINY EF ++MMAK
Sbjct:   26 GHITTEEFGAVMRSLGLNLTQAELQEEINDSDLDGDGTINFTEFLCAMA---KDTYSEKDLKKDFRLFDIDKNGFISAAEMRYVRTILRWKQTDEEIDEIIKAADVDGDGQINYREFARLMMAK 146          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CALM_YEAST (Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.732e-35
Identity = 71/121 (58.68%), Postives = 98/121 (80.99%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G I++ EL TVMRSLG +P+EAE+ D++NE+D DGN  I+F EFL LM+R++K  DSE+EL EAF+VFDK+ +G ISAAEL+HV+T++GEKLTD EVD+M+RE   DG G+IN ++F  ++
Sbjct:   26 GSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS-DGSGEINIQQFAALL 145          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CALM_KLULA (Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.955e-35
Identity = 72/121 (59.50%), Postives = 97/121 (80.17%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G I+  EL TVMRSLG +P+EAE+ D++NE+D DGN  I+F EFL LM+R++K  DSE+EL EAF+VFDK+ +G ISAAEL+HV+T++GEKLTD EVDEM+RE   DG G+IN ++F  ++
Sbjct:   26 GSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALL 145          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CML6_ORYSJ (Putative calmodulin-like protein 6 OS=Oryza sativa subsp. japonica GN=CML6 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 69/126 (54.76%), Postives = 97/126 (76.98%), Query Frame = -2
Query:  340 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS---EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 708
            GCI+ +EL TV+  LG  P++ +LQDMI  VD DGNGTI+F EFL +M +K+ + D    EEEL++AFR+FDKD NGFIS  EL  VM +LGE++T++E+D+M++ AD + DGQ++YEEF +VMM+
Sbjct:   26 GCISREELATVLTRLGMAPSQEDLQDMIVAVDEDGNGTIEFDEFLAIMKKKLYENDKGDDEEELRKAFRIFDKDDNGFISRNELSMVMASLGEEMTEDEIDDMMKAADSNNDGQVDYEEFKRVMMS 151          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 68/80 (85.00%), Postives = 76/80 (95.00%), Query Frame = -2
Query:  337 LNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 576
            L +MARKMK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    1 LTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 80          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 65/124 (52.42%), Postives = 95/124 (76.61%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            GCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 65/124 (52.42%), Postives = 95/124 (76.61%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            GCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 65/124 (52.42%), Postives = 95/124 (76.61%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            GCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC2_RANES (Troponin C, skeletal muscle OS=Rana esculenta PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32
Identity = 66/124 (53.23%), Postives = 95/124 (76.61%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G I+TKELGTVMR LGQ PT+ EL  +I EVD DG+GTIDF EFL +M R+MK+     SEEEL E FR+FDK+ +G+I + EL  ++ + GE +TDEE++E++++ D + DG+I+++EF+K+M
Sbjct:   35 GDISTKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAQGKSEEELAECFRIFDKNADGYIDSEELGEILRSSGESITDEEIEELMKDGDKNNDGKIDFDEFLKMM 158          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32
Identity = 65/124 (52.42%), Postives = 95/124 (76.61%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            GCI+TKELG VMR LGQNPT  ELQ+MI+EVD DG+GT+DF EFL +M R MKD     SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
The following BLAST results are available for this feature:
BLAST of CF832293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
CML10_ARATH7.033e-3765.32Calmodulin-like protein 10 OS=Arabidopsis thaliana... [more]
CALM_YEAST1.732e-3558.68Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=... [more]
CALM_KLULA2.955e-3559.50Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV... [more]
CML6_ORYSJ2.502e-3454.76Putative calmodulin-like protein 6 OS=Oryza sativa... [more]
CALM_STRPU1.621e-3385.00Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
TNNC1_PIG2.341e-3252.42Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE2.341e-3252.42Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_BOVIN2.341e-3252.42Troponin C, slow skeletal and cardiac muscles OS=B... [more]
TNNC2_RANES3.058e-3253.23Troponin C, skeletal muscle OS=Rana esculenta PE=1... [more]
TNNC1_RABIT3.058e-3252.42Troponin C, slow skeletal and cardiac muscles OS=O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832293 ID=CF832293; Name=CF832293; organism=Citrus sinensis; type=EST; length=709bp
TTTTGATACATACGATAGGAGACATATTTCGACCGAAAGAAAAATAAACA
TCGGAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACATTCAT
AGAACAGCGGAACAACTAAAATAATAAAAACCGAAAAGTTTTGCGAGTCA
CAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAGGCCCA
TCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGACTATCA
AATTAAAAATTGGAAAAGAGAAAACTAGGAATCCCTTTATAATTTAGTCA
ACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCATCATAA
CCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACATCAGCT
TCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTT
TGTCATCACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCT
TGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCC
TTCATCTTCCTGGCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCC
ATTACCATCAGCATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAG
TGGGGTTCTGACCCAGTGACCTCATAACAGTGCCAAGCTCCTTGGTGGTA
ATGCAACCG
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