CF832293
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32 Identity = 65/124 (52.42%), Postives = 95/124 (76.61%), Query Frame = -2 Query: 346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708 GCI+TKELG VMR LGQNPT ELQ+MI+EVD DG+GT+DF EFL +M R MKD SEEEL + FR+FDK+ +G+I EL+ ++ GE +T+++++E++++ D + DG+I+Y+EF++ M Sbjct: 34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32 Identity = 64/124 (51.61%), Postives = 95/124 (76.61%), Query Frame = -2 Query: 346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708 GCI+TKELG VMR LGQNPT ELQ+MI+EVD DG+GT+DF EFL +M R MKD +EEEL + FR+FDK+ +G+I EL+ ++ GE +T+++++E++++ D + DG+I+Y+EF++ M Sbjct: 34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC2_MELGA (Troponin C, skeletal muscle OS=Meleagris gallopavo GN=TNNC2 PE=1 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.589e-31 Identity = 65/124 (52.42%), Postives = 94/124 (75.81%), Query Frame = -2 Query: 346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708 G I+TKELGTVMR LGQNPT+ EL +I EVD DG+GTIDF EFL +M R+MK+ SEEEL FR+FDK+ +GFI EL ++ GE +T+EE++++++++D + DG+I+++EF+K+M Sbjct: 35 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEEIEDLMKDSDKNNDGRIDFDEFLKMM 158
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC1_COTJA (Troponin C, slow skeletal and cardiac muscles OS=Coturnix coturnix japonica GN=TNNC1 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.416e-31 Identity = 62/124 (50.00%), Postives = 95/124 (76.61%), Query Frame = -2 Query: 346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708 GCI+TKELG VMR LGQNPT ELQ+MI+EVD DG+GT+DF +FL +M R MKD +EEEL + FR+FDK+ +G+I EL+ ++ GE +T+++++E++++ + + DG+I+Y+EF++ M Sbjct: 34 GCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDQFLVMMVRCMKDDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGNKNNDGRIDYDEFLQFM 157
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC2_CHICK (Troponin C, skeletal muscle OS=Gallus gallus GN=TNNC2 PE=1 SV=3) HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31 Identity = 64/124 (51.61%), Postives = 94/124 (75.81%), Query Frame = -2 Query: 346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708 G I+TKELGTVMR LGQNPT+ EL +I EVD DG+GTIDF EFL +M R+MK+ SEEEL FR+FDK+ +GFI EL ++ GE +T+E+++++++++D + DG+I+++EF+K+M Sbjct: 36 GDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 159
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.532e-31 Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = -2 Query: 346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708 G I KEL M +LG P + E+Q MI+++D DG+GTIDF EFL +M KM + DS EE+ +AFR+FD DQ G I+ L+ V LGE LTDEE+ EMI EAD DGDG+IN EEF ++M Sbjct: 22 GTIDAKELKVXMXALGFEPKKEEIQKMISDIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELGENLTDEEIQEMIDEADRDGDGEINEEEFFRIM 142
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CML12_ARATH (Calmodulin-like protein 12 OS=Arabidopsis thaliana GN=CML12 PE=1 SV=3) HSP 1 Score: 133.265 bits (334), Expect = 1.285e-30 Identity = 77/141 (54.61%), Postives = 92/141 (65.25%), Query Frame = -2 Query: 337 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA---------RKMKDT--------DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 708 G IT KEL TVM SLG+N T+A+LQDM+NEVD DG+GTIDFPEFL LMA R K T D E +EAFRVFDK+ +G+I+ ELR M +LGE T E+ +MI EAD DGDG I++ EFV VM K Sbjct: 115 GSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLMAKNQGHDQAPRHTKKTMVDYQLTDDQILEFREAFRVFDKNGDGYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFVCVMTGK 255 HSP 2 Score: 124.405 bits (311), Expect = 5.968e-28 Identity = 65/137 (47.45%), Postives = 93/137 (67.88%), Query Frame = -2 Query: 346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM---------------KDTDSE-EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708 G IT KELGT+MRS+G+ PT+A+LQD++NE D DG+GTIDFPEFL +MA+ K TD + E +E+FR+FDK+ +G I+ ELR VM +LG+ T ++ +M+ E D+DGDG I++ EF+ +M Sbjct: 26 GSITKKELGTMMRSIGEKPTKADLQDLMNEADLDGDGTIDFPEFLCVMAKNQGHDQAPRHTKKTMADKLTDDQITEYRESFRLFDKNGDGSITKKELRTVMFSLGKNRTKADLQDMMNEVDLDGDGTIDFPEFLYLM 162 HSP 3 Score: 78.5666 bits (192), Expect = 3.755e-14 Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = -2 Query: 493 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQ 708 G IT EL T MRSLG+ T+AELQDMINE DADG+GTI F EF+ +M KM DT S+ KE +RV ++ Q Sbjct: 205 GYITVNELRTTMRSLGETQTKAELQDMINEADADGDGTISFSEFVCVMTGKMIDTQSK---KETYRVVNQGQ 273
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC2_RABIT (Troponin C, skeletal muscle OS=Oryctolagus cuniculus GN=TNNC2 PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 2.191e-30 Identity = 64/124 (51.61%), Postives = 91/124 (73.39%), Query Frame = -2 Query: 346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708 G I+ KELGTVMR LGQ PT+ EL +I EVD DG+GTIDF EFL +M R+MK+ SEEEL E FR+FD++ +G+I A EL + GE +TDEE++ ++++ D + DG+I+++EF+K+M Sbjct: 33 GDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC2_PIG (Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2 PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 2.191e-30 Identity = 64/124 (51.61%), Postives = 91/124 (73.39%), Query Frame = -2 Query: 346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT---DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708 G I+ KELGTVMR LGQ PT+ EL +I EVD DG+GTIDF EFL +M R+MK+ SEEEL E FR+FD++ +G+I A EL + GE +TDEE++ ++++ D + DG+I+++EF+K+M Sbjct: 32 GDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNMDGYIDAEELAEIFRASGEHVTDEEIESIMKDGDKNNDGRIDFDEFLKMM 155
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.191e-30 Identity = 65/124 (52.42%), Postives = 92/124 (74.19%), Query Frame = -2 Query: 346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708 G I+TKELGTVMR LGQNPT EL +I EVD DG+GTIDF EFL +M R++K+ SEEEL E FRVFDK+ +GFI E ++ + GE +++EE+DE++ + D + DG+I+++E++K+M Sbjct: 33 GDISTKELGTVMRMLGQNPTREELDAIIEEVDEDGSGTIDFEEFLVMMVRQLKEDQAGKSEEELAEFFRVFDKNGDGFIDREEFGEILRSSGEPVSEEEIDELMADGDKNNDGKIDFDEWLKMM 156 The following BLAST results are available for this feature:
BLAST of CF832293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 411
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832293 ID=CF832293; Name=CF832293; organism=Citrus sinensis; type=EST; length=709bpback to top |