CF832293

Overview
NameCF832293
Unique NameCF832293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 55/122 (45.08%), Postives = 85/122 (69.67%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKM-KDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G +T  ELG+++RSLG  P++ +L  +I + D + NG ++F EF+ L+   + K   ++++LK  FR+FD+D NG+I+AAEL H M  LG  LT EE+  MI+EAD DGDG I+++EFV+ +
Sbjct:   34 GSLTELELGSLLRSLGLKPSQDQLDTLIQKADRNNNGLVEFSEFVALVEPDLVKCPYTDDQLKAIFRMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADRDGDGCIDFQEFVQAI 155          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC2_CAEEL (Troponin C, isoform 2 OS=Caenorhabditis elegans GN=tnc-2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.828e-24
Identity = 51/125 (40.80%), Postives = 85/125 (68.00%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL----NLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G I   ++G ++R++GQ   E +L+ +I E DADG+G I+F EF     N +     D   EEEL+EAFR++DK+ NG+I+ ++LR ++  L + +++EE+DEMI E D DG G ++++EF+++M
Sbjct:   33 GYIRATQVGQILRTMGQAFEERDLKQLIKEFDADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMM 157          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CAM2_SCHPO (Myosin 1 light chain cam2 OS=Schizosaccharomyces pombe GN=cam2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 56/124 (45.16%), Postives = 82/124 (66.13%), Query Frame = -2
Query:  337 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 708
            G I T  +G+V+RSLG N T+AEL  + NE+       ID  +F++ ++ K+++T+SEEE  +AFRVFDKD +G+I  A+    M  LGEKL+D EV  M++EAD    G  +Y +FV+ +MAK
Sbjct:   24 GLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GDAIDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CML9_ORYSJ (Probable calcium-binding protein CML9 OS=Oryza sativa subsp. japonica GN=CML9 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 58/127 (45.67%), Postives = 81/127 (63.78%), Query Frame = -2
Query:  343 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG-----TIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 708
            G I   EL T +RSLGQN  EAE +  + +  A G G      IDF  FL++ ARKM+   +E+EL     VFD  ++G I A +LR  M + G++LT+EE DEM+R+AD  G+G++ Y+EFVKV+M
Sbjct:   26 GRIAAGELVTALRSLGQNVDEAEARRFLADATASGGGGGGGGDIDFAAFLSVAARKMRRGATEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC_PATYE (Troponin C OS=Patinopecten yessoensis PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 49/123 (39.84%), Postives = 82/123 (66.67%), Query Frame = -2
Query:  340 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 708
            G ++ K+LG + +SLG    + +++D  +E+D +  G ++   ++ L  RK+K+   E ELKEAFRV DK++ G I    LR ++++LG++LT+EE++ MI E D DG G ++YEEF  +MM+
Sbjct:   27 GTVSCKDLGAIFKSLGLLVKDDKIKDWSDEMDEEATGRLNCDAWIQLFERKLKEDLDERELKEAFRVLDKEKKGVIKVDVLRWILSSLGDELTEEEIENMIAETDTDGSGTVDYEEFKCLMMS 149          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC1_PONLE (Troponin C, isotype alpha OS=Pontastacus leptodactylus PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 51/124 (41.13%), Postives = 82/124 (66.13%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G IT + +G ++R +G   +E  LQ +I+E D DG+G I+F EF  L A+ + + D E   +ELKEAFR++D+  +G+I+   LR ++  L  +LT++ +DE+I E D DG G I++ EF+K+M
Sbjct:   25 GFITPETVGIILRMMGVKISERHLQQVISETDEDGSGEIEFEEFAELAAKFLSEEDEEALKKELKEAFRIYDRGGDGYITTQVLREILKELDNRLTEDNLDEIIEEIDEDGSGTIDFMEFMKMM 148          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 58/122 (47.54%), Postives = 78/122 (63.93%), Query Frame = -2
Query:  343 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 708
            G I++KELG +M SLG    E EL+  I E+D  G+G I+F EF+ L  + M   D  E LK+AF V+D D NG ISA EL  V+ +LG++ +  E  +MI   D DGDG I++EEF K+MM
Sbjct:   51 GKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGTIDFEEF-KIMM 171          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CATR6_PARTE (Caltractin ICL1f OS=Paramecium tetraurelia GN=Icl1f PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = -2
Query:  337 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 702
            I  KEL   M SLG       +  MI+++D DG+G IDF EFL LM  ++ + DS+ ++++ F +FD ++ GFI+  +LR V   LGE + D E+ EMI  AD DGD Q+ +E+F  +M  K
Sbjct:   59 IDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGFITLKDLRKVAKELGETMDDSELQEMIDRADSDGDTQVTFEDFYNIMTKK 180          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC1_HOMAM (Troponin C, isoform 1 OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 50/124 (40.32%), Postives = 81/124 (65.32%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G IT   +G ++R +G   ++  LQ++I+E D DG+G I+F EF  L A+ + + D E   +ELKEAFR++D+  NG+I+   L+ ++  L  KLT++ +D +I E D DG G I++ EF+K+M
Sbjct:   25 GFITPDTVGVILRMMGVKISDRHLQEVISETDEDGSGEIEFEEFAALAAKFLSEEDEEALKKELKEAFRIYDRGGNGYITVHTLKEILRELDNKLTEDNLDSIIEEVDEDGSGTIDFNEFMKMM 148          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CALM4_MOUSE (Calmodulin-4 OS=Mus musculus GN=Calm4 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 53/120 (44.17%), Postives = 82/120 (68.33%), Query Frame = -2
Query:  349 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 708
            G I+ +ELG VM+ LG+N  E +L+ +I+++D DG+G I F EFL  +  K K      EL+  F V D++ +G+I+  EL+  ++ LGE L+ EE+++MIR ADVD DG++ YEEFV++
Sbjct:   26 GHISVEELGDVMKQLGKNLPEKDLKALISKLDTDGDGKISFEEFLTAI-EKYKKGHRAGELRAVFNVLDQNGDGYITVDELKESLSKLGESLSQEELEDMIRVADVDQDGKVKYEEFVRL 144          
The following BLAST results are available for this feature:
BLAST of CF832293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
CML18_ARATH5.228e-2445.08Probable calcium-binding protein CML18 OS=Arabidop... [more]
TNNC2_CAEEL6.828e-2440.80Troponin C, isoform 2 OS=Caenorhabditis elegans GN... [more]
CAM2_SCHPO3.389e-2345.16Myosin 1 light chain cam2 OS=Schizosaccharomyces p... [more]
CML9_ORYSJ5.780e-2345.67Probable calcium-binding protein CML9 OS=Oryza sat... [more]
TNNC_PATYE9.860e-2339.84Troponin C OS=Patinopecten yessoensis PE=1 SV=1[more]
TNNC1_PONLE1.288e-2241.13Troponin C, isotype alpha OS=Pontastacus leptodact... [more]
CML25_ARATH1.288e-2247.54Probable calcium-binding protein CML25 OS=Arabidop... [more]
CATR6_PARTE1.288e-2241.80Caltractin ICL1f OS=Paramecium tetraurelia GN=Icl1... [more]
TNNC1_HOMAM1.682e-2240.32Troponin C, isoform 1 OS=Homarus americanus PE=1 S... [more]
CALM4_MOUSE1.682e-2244.17Calmodulin-4 OS=Mus musculus GN=Calm4 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832293 ID=CF832293; Name=CF832293; organism=Citrus sinensis; type=EST; length=709bp
TTTTGATACATACGATAGGAGACATATTTCGACCGAAAGAAAAATAAACA
TCGGAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACATTCAT
AGAACAGCGGAACAACTAAAATAATAAAAACCGAAAAGTTTTGCGAGTCA
CAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAGGCCCA
TCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGACTATCA
AATTAAAAATTGGAAAAGAGAAAACTAGGAATCCCTTTATAATTTAGTCA
ACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCATCATAA
CCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACATCAGCT
TCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTT
TGTCATCACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCT
TGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCC
TTCATCTTCCTGGCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCC
ATTACCATCAGCATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAG
TGGGGTTCTGACCCAGTGACCTCATAACAGTGCCAAGCTCCTTGGTGGTA
ATGCAACCG
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