CF832293

Overview
NameCF832293
Unique NameCF832293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNCA_HOMAM (Troponin C, isoform 2A OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 49/124 (39.52%), Postives = 83/124 (66.94%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G IT + +G ++R +G   +E  LQ++I E D DG+G ++F EF+ L A+ + + D E    EL+EAFRV+DK+ NG+I+   L+ ++  L  +LT+E++D +I E D DG G +++ EF+++M
Sbjct:   25 GFITPETVGVILRMMGVKISEKNLQEVIAETDEDGSGELEFEEFVELAAKFLIEEDEEALKTELREAFRVYDKEGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGTLDFNEFMEMM 148          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CML14_ORYSJ (Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica GN=CML14 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD---SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G +T  EL  ++RSLG  PT  E+  ++  +DA+GNG+++F E    +A  +        + +L E FR FD+D NGFISAAEL   M  LG+ LT EE+  M+R+AD DGDG I+++EF  VM
Sbjct:   39 GSLTQLELAALLRSLGLRPTGDEVHALLAGMDANGNGSVEFDELAAAIAPVLTTQTHLVDQAQLLEVFRAFDRDGNGFISAAELARSMARLGQPLTFEELTRMMRDADTDGDGVISFKEFAAVM 162          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 63/124 (50.81%), Postives = 77/124 (62.10%), Query Frame = -2
Query:  340 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDS-EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 708
            G I+  ELG +  SLG   T+ EL  M+ E DADG+G I   EF  L A    D  + EE+L+ AFRVFD D NG ISAAEL  V+  LGEK T ++   MI   D +GDG I++EEF KVMMA
Sbjct:   54 GRISRSELGALFESLGHAATDDELARMMAEADADGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLGEKATVQQCRRMIEGVDQNGDGLISFEEF-KVMMA 176          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNC_TODPA (Troponin C OS=Todarodes pacificus PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 47/122 (38.52%), Postives = 78/122 (63.93%), Query Frame = -2
Query:  343 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 708
            G ++ KEL  + +SL  + ++ +LQ  ++E+D D  G I + +F  L  RK+++ + E EL+ AFRV DK+  G I   +LR ++ +LG+ L D+E+ +MI E D DG G ++YEEF  +M+
Sbjct:   26 GAVSNKELTNLFKSLALHVSDDKLQQWVDEMDEDATGVIRWEKFKILFERKVQEDEDERELRSAFRVLDKNNQGVIDVEDLRWILKSLGDDLNDDEIQDMINETDTDGSGTVDYEEFSALML 147          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CATR4_PARTE (Caltractin ICL1d OS=Paramecium tetraurelia GN=Icl1d PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = -2
Query:  337 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 702
            I  KEL   M SLG       +  MI+++D DG+G IDF EFL LM  ++ + DS+ ++++ F +FD ++ G I+  +LR V   LGE + D E+ EMI  AD DGD Q+ +E+F  +M  K
Sbjct:   57 IDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVITLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMTKK 178          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CATR3_PARTE (Caltractin ICL1c OS=Paramecium tetraurelia GN=Icl1c PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = -2
Query:  337 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 702
            I  KEL   M SLG       +  MI+++D DG+G IDF EFL LM  ++ + DS+ ++++ F +FD ++ G I+  +LR V   LGE + D E+ EMI  AD DGD Q+ +E+F  +M  K
Sbjct:   59 IDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVITLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMTKK 180          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CATR2_PARTE (Caltractin ICL1b OS=Paramecium tetraurelia GN=Icl1b PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = -2
Query:  337 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 702
            I  KEL   M SLG       +  MI+++D DG+G IDF EFL LM  ++ + DS+ ++++ F +FD ++ G I+  +LR V   LGE + D E+ EMI  AD DGD Q+ +E+F  +M  K
Sbjct:   58 IDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVITLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMTKK 179          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: TNNCB_HOMAM (Troponin C, isoform 2B OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 48/124 (38.71%), Postives = 83/124 (66.94%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G IT + +G ++R +G   +E  LQ++I+E D DG+G ++F EF+ L A+ + + D E    EL+EAFRV+D+  NG+I+   L+ ++  L  +LT+E++D +I E D DG G +++ EF+++M
Sbjct:   25 GFITPETVGVILRMMGVKISEKNLQEVISETDEDGSGELEFEEFVELAAKFLIEEDEEALKAELREAFRVYDRGGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGTLDFNEFMQMM 148          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CATR1_PARTE (Caltractin ICL1a OS=Paramecium tetraurelia GN=Icl1a PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.391e-22
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = -2
Query:  337 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 702
            I  KEL   M SLG       +  MI+++D DG+G IDF EFL LM  ++ + DS+ ++++ F +FD ++ G ++  +LR V   LGE + D E+ EMI  AD DGD Q+ +E+F  +M  K
Sbjct:   57 IDPKELKAAMTSLGFEAKNQTIYQMISDLDTDGSGQIDFAEFLKLMTARISERDSKADIQKVFNLFDSERAGVVTLKDLRKVAKELGETMDDSELQEMIDRADSDGDAQVTFEDFYNIMTKK 178          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: MYL9_MOUSE (Myosin regulatory light polypeptide 9 OS=Mus musculus GN=Myl9 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G I  ++L  ++ SLG+NPT+  L+ M+NE      G I+F  FL +   K+  TD E+ ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:   47 GFIDKEDLHDMLASLGKNPTDEYLEGMMNEAP----GPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
The following BLAST results are available for this feature:
BLAST of CF832293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
TNNCA_HOMAM2.869e-2239.52Troponin C, isoform 2A OS=Homarus americanus PE=1 ... [more]
CML14_ORYSJ3.747e-2244.35Probable calcium-binding protein CML14 OS=Oryza sa... [more]
CML10_ORYSJ3.747e-2250.81Probable calcium-binding protein CML10 OS=Oryza sa... [more]
TNNC_TODPA4.893e-2238.52Troponin C OS=Todarodes pacificus PE=1 SV=3[more]
CATR4_PARTE4.893e-2240.98Caltractin ICL1d OS=Paramecium tetraurelia GN=Icl1... [more]
CATR3_PARTE4.893e-2240.98Caltractin ICL1c OS=Paramecium tetraurelia GN=Icl1... [more]
CATR2_PARTE4.893e-2240.98Caltractin ICL1b OS=Paramecium tetraurelia GN=Icl1... [more]
TNNCB_HOMAM6.391e-2238.71Troponin C, isoform 2B OS=Homarus americanus PE=1 ... [more]
CATR1_PARTE6.391e-2240.16Caltractin ICL1a OS=Paramecium tetraurelia GN=Icl1... [more]
MYL9_MOUSE8.347e-2241.32Myosin regulatory light polypeptide 9 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832293 ID=CF832293; Name=CF832293; organism=Citrus sinensis; type=EST; length=709bp
TTTTGATACATACGATAGGAGACATATTTCGACCGAAAGAAAAATAAACA
TCGGAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACATTCAT
AGAACAGCGGAACAACTAAAATAATAAAAACCGAAAAGTTTTGCGAGTCA
CAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAGGCCCA
TCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGACTATCA
AATTAAAAATTGGAAAAGAGAAAACTAGGAATCCCTTTATAATTTAGTCA
ACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCATCATAA
CCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACATCAGCT
TCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTT
TGTCATCACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCT
TGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCC
TTCATCTTCCTGGCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCC
ATTACCATCAGCATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAG
TGGGGTTCTGACCCAGTGACCTCATAACAGTGCCAAGCTCCTTGGTGGTA
ATGCAACCG
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