CF832293

Overview
NameCF832293
Unique NameCF832293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: MLE1_CHICK (Myosin light chain 1, skeletal muscle isoform OS=Gallus gallus PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 54/125 (43.20%), Postives = 80/125 (64.00%), Query Frame = -2
Query:  340 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT--IDFPEFLNLM--ARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 702
            IT  ++G ++R+LGQNPT AE+  ++     +      I F EFL ++  A   KD  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+T+EEV+E+++  + D +G INYE FVK +M+
Sbjct:   68 ITLSQVGDIVRALGQNPTNAEINKILGNPSKEEMNAKKITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYEAFVKHIMS 191          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: ML12B_RAT (Myosin regulatory light chain 12B OS=Rattus norvegicus GN=Myl12b PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G I  ++L  ++ SLG+NPT+A L  M+NE      G I+F  FL +   K+  TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   47 GFIDKEDLHDMLASLGKNPTDAYLDAMMNEAP----GRINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: ML12B_MOUSE (Myosin regulatory light chain 12B OS=Mus musculus GN=Myl12b PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G I  ++L  ++ SLG+NPT+A L  M+NE      G I+F  FL +   K+  TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   47 GFIDKEDLHDMLASLGKNPTDAYLDAMMNEAP----GPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: ML12B_HUMAN (Myosin regulatory light chain 12B OS=Homo sapiens GN=MYL12B PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G I  ++L  ++ SLG+NPT+A L  M+NE      G I+F  FL +   K+  TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   47 GFIDKEDLHDMLASLGKNPTDAYLDAMMNEAP----GPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CML15_ARATH (Probable calcium-binding protein CML15 OS=Arabidopsis thaliana GN=CML15 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 49/123 (39.84%), Postives = 79/123 (64.23%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTD--SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G +T  EL  ++RSLG  P+  ++  ++  +D++GNG ++F E +  +   + +    + E+L E F+ FD+D NGFISAAEL   M  +G+ LT +E+ EMI+EAD +GDG I++ EF  +M
Sbjct:   21 GSLTILELAALLRSLGLKPSGDQIHVLLASMDSNGNGFVEFDELVGTILPDLNEEVLINSEQLLEIFKSFDRDGNGFISAAELAGAMAKMGQPLTYKELTEMIKEADTNGDGVISFGEFASIM 143          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CALL6_HUMAN (Calmodulin-like protein 6 OS=Homo sapiens GN=CALML6 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMA-RKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G + T EL  +M  LG NPT++EL  M  +VD D  G  +   FL LM     K  + E EL+ AFRVFDK+  G+I    L++V+ N GE L + E ++M++EAD DGD  I+YEEFV +M
Sbjct:   51 GEVKTGELEWLMSLLGINPTKSELASMAKDVDRDNKGFFNCDGFLALMGVYHEKAQNQESELRAAFRVFDKEGKGYIDWNTLKYVLMNAGEPLNEVEAEQMMKEADKDGDRTIDYEEFVAMM 172          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CABP5_BOVIN (Calcium-binding protein 5 OS=Bos taurus GN=CABP5 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 49/126 (38.89%), Postives = 85/126 (67.46%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE----EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G I+ K+LG +MR++G  PTE EL ++  ++  +  G +DF +F+ LM  K+    +     +E+++AF+ FD + +G I+  EL+  M  L G+KLT +E+ E+++EAD++GDG +++EEFVK+M
Sbjct:   46 GFISCKDLGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFDDFVELMTPKLLAETAGMIGVQEMRDAFKEFDANGDGEITLGELQQAMQRLLGDKLTSQEISEVVQEADINGDGTVDFEEFVKMM 171          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CABP4_HUMAN (Calcium-binding protein 4 OS=Homo sapiens GN=CABP4 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 53/126 (42.06%), Postives = 81/126 (64.29%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSE----EELKEAFRVFDKDQNGFISAAELRH-VMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G I+ +ELG  MR+LG  PTE EL ++   +     G +DF EF+ L+  K+++  +      EL+ AFR FD+D++G I+ AELR  V   LGE L   E+DEM+RE D++GDG ++++EFV ++
Sbjct:  147 GYISHRELGDCMRTLGYMPTEMELLEVSQHIKMRMGGRVDFEEFVELIGPKLREETAHMLGVRELRIAFREFDRDRDGRITVAELREAVPALLGEPLAGPELDEMLREVDLNGDGTVDFDEFVMML 272          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 51/123 (41.46%), Postives = 80/123 (65.04%), Query Frame = -2
Query:  346 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 708
            G IT +EL   + +LG    + +L  MI ++D +G+G +D  EF  L    M++ D EE+++EAF VFD++++GFI+  ELR V+ +LG K   T E+   MI + DVDGDG +N++EF ++M
Sbjct:   19 GKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of CF832293 vs. ExPASy Swiss-Prot
Match: POLC2_JUNOX (Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = -2
Query:  337 GCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 708
            G I+  EL  ++RSLG +  EAE++ M+ E DADG+G +   EF++L  +      S ++LK AF+VFD+D NG ISAAEL H + ++GE  T EE   +I   D +GDG I+ EEF  +M ++
Sbjct:   40 GKISGSELADILRSLGSDVGEAEVKAMMEEADADGDGYVSLQEFVDLNNKGA----SVKDLKNAFKVFDRDCNGSISAAELCHTLESVGEPCTIEESKNIIHNVDKNGDGLISVEEFQTMMTSE 159          
The following BLAST results are available for this feature:
BLAST of CF832293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 411
Match NameE-valueIdentityDescription
MLE1_CHICK2.056e-2043.20Myosin light chain 1, skeletal muscle isoform OS=G... [more]
ML12B_RAT2.056e-2040.50Myosin regulatory light chain 12B OS=Rattus norveg... [more]
ML12B_MOUSE2.056e-2040.50Myosin regulatory light chain 12B OS=Mus musculus ... [more]
ML12B_HUMAN2.056e-2040.50Myosin regulatory light chain 12B OS=Homo sapiens ... [more]
CML15_ARATH2.056e-2039.84Probable calcium-binding protein CML15 OS=Arabidop... [more]
CALL6_HUMAN2.056e-2045.08Calmodulin-like protein 6 OS=Homo sapiens GN=CALML... [more]
CABP5_BOVIN2.056e-2038.89Calcium-binding protein 5 OS=Bos taurus GN=CABP5 P... [more]
CABP4_HUMAN2.056e-2042.06Calcium-binding protein 4 OS=Homo sapiens GN=CABP4... [more]
CML3_ARATH2.685e-2041.46Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]
POLC2_JUNOX3.507e-2043.55Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01K03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832293 ID=CF832293; Name=CF832293; organism=Citrus sinensis; type=EST; length=709bp
TTTTGATACATACGATAGGAGACATATTTCGACCGAAAGAAAAATAAACA
TCGGAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACATTCAT
AGAACAGCGGAACAACTAAAATAATAAAAACCGAAAAGTTTTGCGAGTCA
CAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAGGCCCA
TCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGACTATCA
AATTAAAAATTGGAAAAGAGAAAACTAGGAATCCCTTTATAATTTAGTCA
ACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCATCATAA
CCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACATCAGCT
TCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTT
TGTCATCACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCT
TGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCC
TTCATCTTCCTGGCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCC
ATTACCATCAGCATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAG
TGGGGTTCTGACCCAGTGACCTCATAACAGTGCCAAGCTCCTTGGTGGTA
ATGCAACCG
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