CF832329

Overview
NameCF832329
Unique NameCF832329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:731..1398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832329 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 54/127 (42.52%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    1 YIKTVEVPKKKINLKFXXXXXXXXXXXXSRNEVDGSTTFNSATVAVVGDGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDI 381
            Y++ V +   K NL              + +  +   TFN+AT A  GDGF+  D+ F+NT  P K   V LRV  D+S  YRC +  YQD LY H  RQ Y    +  TVDFI GNAAAVFQ C I
Sbjct:  115 YVEIVVIGNMKSNLTLIADGQDSTIITFNLSSSNSKRTFNTATFASNGDGFIRVDMCFRNTTWPVKGPVVTLRVNGDMSIIYRCRVEEYQDALYPHKNRQCYREYFLMDTVDFICGNAAAVFQFCQI 241          
BLAST of CF832329 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.542e-19
Identity = 58/190 (30.53%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  112 TFNSATVAVVGDGFLARDITFQNTA----GPSKH-QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQ 666
            T +SAT+ V+ D F+A +I  +N+A    G  K  QA+++R+  + +AFY C    YQDT+   +   F+  C I GT DFIFG+  +++    ++      +   ++TA       + +G     C++  T   +        YLGR W  + + V   +D+S V+NP+GW E        T+FY EY+
Sbjct:  116 TVDSATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQLNV---VGDGIRVITAHAGKSAAEKSGYSFVHCKVTGTGTGI--------YLGRSWMSHPKVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYK 294          
BLAST of CF832329 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 53/190 (27.89%), Postives = 95/190 (50.00%), Query Frame = 1
Query:  112 TFNSATVAVVGDGFLARDITFQNTA----GPSKH-QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQ 666
            T +SA++ ++ D F+A +I  +NTA    G +K  QA+++R+  + +AFY C    +QDT+   +   F+  C + GT DFIFG+  +++    +H      +   ++ A       + +G     C++  T   +        YLGR W  + + V   ++++ V+NP GW E        T+FY EY+
Sbjct:  139 TVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGTGGGI--------YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYK 317          
BLAST of CF832329 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 53/190 (27.89%), Postives = 95/190 (50.00%), Query Frame = 1
Query:  112 TFNSATVAVVGDGFLARDITFQNTA----GPSKH-QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQ 666
            T +SA++ ++ D F+A +I  +NTA    G +K  QA+++R+  + +AFY C    +QDT+   +   F+  C + GT DFIFG+  +++    +H      +   ++ A       + +G     C++  T   +        YLGR W  + + V   ++++ V+NP GW E        T+FY EY+
Sbjct:  139 TVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGTGGGI--------YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYK 317          
BLAST of CF832329 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.556e-16
Identity = 58/183 (31.69%), Postives = 81/183 (44.26%), Query Frame = 1
Query:  100 DGSTTFNSATVAVVGDGFLARDITFQNTAG--PSKHQ----AVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHAR---RPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 621
            D   T  SAT     D  +   ITF+NT    P+  +    AVA R+  D         +  QDTL+    R +Y  CII+G +DFIFG   ++F+ C ++         N    +TA  R  P+   G V   C          V G  +T LGR W   +R +  +S +SDV+ P GW  W
Sbjct:  101 DHQATDISATFTAFADDIVISGITFKNTYNIVPNNKREIVPAVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDC---------TVTGVGKTLLGRAWGSNARVIFDRSRLSDVVLPIGWDAW 274          
BLAST of CF832329 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 62/171 (36.26%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  100 DGST--TFNSATVAVVGDGFLARDITFQNT----AGPSKH----------QAVALRV--GSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARR----PNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPW 546
            DGS   T  S+T+ +    F A+ +T +N     A  +K           QAVAL V    D + F    ++ YQDTLYV   R F++ C I+GTVDFIFG+  A+F NCD+ +R      + N    +TA    + NQ  G+VI   R+   SD +  K      LGRPW
Sbjct:  103 DGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAK---SYGLGRPW 269          
BLAST of CF832329 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 62/171 (36.26%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  100 DGST--TFNSATVAVVGDGFLARDITFQNT----AGPSKH----------QAVALRV--GSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARR----PNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPW 546
            DGS   T  S+T+ +    F A+ +T +N     A  +K           QAVAL V    D + F    ++ YQDTLYV   R F++ C I+GTVDFIFG+  A+F NCD+ +R      + N    +TA    + NQ  G+VI   R+   SD +  K      LGRPW
Sbjct:  103 DGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAK---SYGLGRPW 269          
The following BLAST results are available for this feature:
BLAST of CF832329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME57_ARATH1.822e-2042.52Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]
PME63_ARATH1.542e-1930.53Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PPME1_ARATH4.487e-1927.89Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME48_ARATH4.487e-1927.89Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PME66_ARATH3.556e-1631.69Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH8.758e-1536.26Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD38.758e-1536.26Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01L02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832329 ID=CF832329; Name=CF832329; organism=Citrus sinensis; type=EST; length=668bp
TACATAAAAACTGTGGAGGTGCCGAAGAAGAAAATTAATCTTAAGTTTAT
TGGATATGGGAGGACTACTACAATAATCACCGGTAGCAGGAATGAGGTTG
ATGGCAGCACTACATTCAACTCTGCAACTGTTGCTGTGGTAGGGGACGGA
TTCTTGGCCAGAGACATAACATTTCAAAACACGGCGGGTCCGTCAAAACA
TCAAGCCGTGGCACTGAGAGTAGGATCAGATTTATCAGCATTCTATAGGT
GTGACATGCTAGCATACCAAGACACTCTCTATGTACACTCACTTCGCCAA
TTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTTCATTTTCGGAAA
TGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTCGCCGCCCCAATC
CAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGACGACCCGAATCAG
AACACAGGCATAGTGATACAAAAATGCAGGATTGGTGCAACATCAGATTT
ACTTGCTGTAAAGGGCAGCTTTGAGACATATTTAGGCAGGCCATGGAAGC
GGTACTCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAAC
CCAGCTGGGTGGTATGAATGGAGTGGGAATTTTGCATTGGACACATTGTT
TTATGCAGAGTATCAAAA
back to top