CF832332

Overview
NameCF832332
Unique NameCF832332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_ARCFU (30S ribosomal protein S7P OS=Archaeoglobus fulgidus GN=rps7p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            +F ++   +VQ++D  L  YI +       YVPH  GR++   F K +  IVERL N +M  G N G K++A  IV  A EII   T  NPIQV+ DA+IN GPR
Sbjct:   12 VFGKYDPSEVQISDPALESYICLEPK----YVPHNHGRHANVPFAKQKVFIVERLINKVMRKGHNTGKKILAYNIVKEAFEIIEKKTKKNPIQVLVDAIINAGPR 112          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METBU (30S ribosomal protein S7P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps7p PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15
Identity = 40/105 (38.10%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            LF +W   +V+V D  +  Y+ +        VPHT+G+++ ++F K+   IVERL N++M + +N G K +A+ IV+ A +I++  T  NP+QV+ +AV N GPR
Sbjct:    4 LFGKWDLTEVEVADAGIKRYVNL----DPVIVPHTSGKHARQQFNKSDITIVERLVNNVMRNAQNTGKKQIALRIVDEAFDIVNSKTKKNPVQVLVEAVSNAGPR 104          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.481e-14
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   14 VLALSQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            V A  +  + P+    LF +W   +V+V D  L  Y+ +        +PH+ G++S + F KA   IVERL N LM    N G K +A+ IV  A E+I+  T  NPI+V+ +A+ N GPR
Sbjct:    6 VKAQPEGDAAPQSKALLFNKWDVSEVKVTDPSLVRYVNLTPQ----IIPHSCGKFSRQEFNKANMMIVERLINRLMQTENNTGKKQLAIGIVRDAFELINKKTKRNPIEVLVEAIGNTGPR 122          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METST (30S ribosomal protein S7P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps7p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            LF +W   +V V D+ L +Y+ +        VPHT GR+  ++F K++  IVERL N +M   RN+G K  A +IV  ALEII+  T  NP+QV+  AV N  PR
Sbjct:    5 LFDKWDVTEVTVEDMGLQNYVCL----DEIVVPHTMGRHVKRQFAKSKVSIVERLMNKIMRTERNSGKKNKAYSIVEDALEIINNKTKQNPVQVLVKAVENTAPR 105          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_NATPD (30S ribosomal protein S7P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps7p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = 2
Query:   47 RYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            R +  LF  W   +++ +D     YI V      T + HT GR+S K+F K++  IVERL N LM    N G K  A  IV  A +I+   TD NP+QV+  AV N GPR
Sbjct:   18 RVSAQLFGEWEIGEIEYDDPSTRRYITV------TPIAHTMGRHSEKQFKKSEISIVERLINRLMQTDENTGKKQQATKIVREAFDIVAERTDENPVQVLVTAVENAGPR 121          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METMA (30S ribosomal protein S7P OS=Methanosarcina mazei GN=rps7p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.348e-14
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            +F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N G K + +  V  A +II+  T  NPIQ++ DA+ N GPR
Sbjct:    7 IFGKWDPTEVEVRDLGIKRYVSLAPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIINRKTQQNPIQILVDAIANAGPR 107          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METVS (30S ribosomal protein S7P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps7p PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.597e-14
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 2
Query:   47 RYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            +  + LF +W    V V D  L  +I +    +   +PHTAGR S K F K +  +VERL N LM    N G K   ++I+  AL I+   T  NPIQV+ DA+ N GPR
Sbjct:    6 KLEIKLFGKWDSTSVTVKDPSLKSHISL----NPVLIPHTAGRNSKKMFDKNKMHVVERLANKLMATQVNTGKKNEVLSIIEEALTIVENRTKENPIQVVVDALENSGPR 111          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METAC (30S ribosomal protein S7P OS=Methanosarcina acetivorans GN=rps7p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.597e-14
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            +F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N G K + +  V  A +I++  T  NPIQV+ DA+ N GPR
Sbjct:    7 IFGKWDPTEVEVKDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTETNTGKKQVTLRAVEEAFDIVNKKTKQNPIQVLVDAIANAGPR 107          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METTH (30S ribosomal protein S7P OS=Methanobacterium thermoautotrophicum GN=rps7p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.253e-13
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            +F +W   +V+V D+ L  YI +     +  VPHT GR+  ++F K++  IVERL N +M   RN+G K  A  IV  A EII+  T  NP+Q++  AV N  PR
Sbjct:    4 VFDKWELDEVKVEDMGLAKYICL----DSILVPHTMGRHVKRQFAKSKVSIVERLINKVMRTERNSGKKNKAYKIVQEAFEIINRRTKENPVQILVKAVENTSPR 104          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METLZ (30S ribosomal protein S7P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps7p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.253e-13
Identity = 41/105 (39.05%), Postives = 60/105 (57.14%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            LF +W   +V V D  +  Y+ + +    T VP + GR + ++F K++  IVERL N LM    N G K+M   +V  A ++I+  T  NP+QV+ DAV N GPR
Sbjct:   12 LFNKWDMSEVVVKDAGMVRYVTITS----TEVPSSCGRLTQQQFTKSEMAIVERLINRLMQQEYNTGKKMMCTKMVMDAFDVINKKTKQNPLQVLVDAVANAGPR 112          
The following BLAST results are available for this feature:
BLAST of CF832332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS7_ARCFU3.896e-1543.8130S ribosomal protein S7P OS=Archaeoglobus fulgidu... [more]
RS7_METBU5.089e-1538.1030S ribosomal protein S7P OS=Methanococcoides burt... [more]
RS7_METB61.481e-1437.1930S ribosomal protein S7P OS=Methanoregula boonei ... [more]
RS7_METST1.934e-1442.8630S ribosomal protein S7P OS=Methanosphaera stadtm... [more]
RS7_NATPD2.526e-1440.9130S ribosomal protein S7P OS=Natronomonas pharaoni... [more]
RS7_METMA7.348e-1436.1930S ribosomal protein S7P OS=Methanosarcina mazei ... [more]
RS7_METVS9.597e-1440.0030S ribosomal protein S7P OS=Methanococcus vanniel... [more]
RS7_METAC9.597e-1436.1930S ribosomal protein S7P OS=Methanosarcina acetiv... [more]
RS7_METTH1.253e-1340.9530S ribosomal protein S7P OS=Methanobacterium ther... [more]
RS7_METLZ1.253e-1339.0530S ribosomal protein S7P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832332 ID=CF832332; Name=CF832332; organism=Citrus sinensis; type=EST; length=377bp
AATGGCGACTGCTGTACTGGCACTGTCTCAAGACCCATCGCCCCCTCGCT
ACAATGTGAACCTCTTCATTAGGTGGACTTTCAAGGATGTTCAGGTCAAT
GACATCTAGTTGAATGATTATATTGGCGTGCGAGCGGCCAAGCACGCTAC
TTATGTGCCTCACACTGCTGGGAGGTACTCTATTAAGCGTTTCCCGAAGG
CCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGT
CGAAACAACGGCTACAAATTGATGGCTGTCACGATTGTTAACCATGCCTT
GGAGATCATTCACCTTTTGACCGACCACAACCCAATTCAAGTCATTGGTG
ATGCTGTCATCAACAGGGGTCCAAGGG
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