CF832336

Overview
NameCF832336
Unique NameCF832336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.317e-14
Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = -1
Query:  516 QFWEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 836
            ++ E    + K +G+A  SE V     E  K      HSE LAVAFGL+ T   + I + KNL  C  CH+  K+IS +  R I VRD   FHHF++G+CSC D  YW
Sbjct:  479 RYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLD--YW 583          
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14
Identity = 42/100 (42.00%), Postives = 52/100 (52.00%), Query Frame = -1
Query:  516 KMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812
            K +  G+  S E+   D     K E+   HSE LA+ FGL+      P+ + KNL  C  CH  +K  S   RR I VRD   FHHF DG CSCGD  +W
Sbjct:  538 KFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGD--FW 635          
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = -1
Query:  528 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINT-APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 785
            +EYV  +  E  K      HS  LAV +G++++   G P+ V KN+  C  CH   K+IS +V+R+I +RD+  FHHF +G CSC D
Sbjct:  808 TEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFVNGKCSCRD 894          
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = -1
Query:  528 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMP-IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 776
            V +D  +  K +    HSE LA+A+GL+        I + KNL  C  CH+ +K IS IV+RD+ +RD   FHHF  G CSCGD
Sbjct:  737 VLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGD 820          
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = -1
Query:  516 DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 767
            D  E  K +    HSE LA+AF L   + G  I + KNL  C  CH  +K  SK+   +I VRD   FH FKDG+CSC D  YW
Sbjct:  562 DVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRD--YW 643          
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13
Identity = 44/103 (42.72%), Postives = 55/103 (53.40%), Query Frame = -1
Query:  516 EKMKAVGFAGSEYVSMDKSEASKAEIFCG-HSEMLAVAFGLINT--APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            EKM  +     +Y      E    E  CG HSE  A+AFGLI++  A    I + KNL  C  CH+T K++SK    DI + DT   HHFK+G CSC D  YW
Sbjct:  794 EKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKD--YW 894          
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = -1
Query:  516 EKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            E M  +G+     +++ D  + SK E    H+E  A     ++T     I V KNL  C  CHN +K +SKIV R++  RD + FHH KDG CSC +  YW
Sbjct:  439 EHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCRE--YW 537          
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = -1
Query:  516 EGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 827
            E   E++  +G+      V  D S+ +K  I   H+E LA+AF L+ T     I + KNL  C  CH  ++  S++  + I +RD   FHHF+ G CSCGD  +W
Sbjct:  555 EELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGD--FW 657          
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = -1
Query:  516 KMKAVGFA---GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMP------IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812
            K+K  G+    GS  V +D  E  K ++   HSE LA+ FGL+N            I + KNL  C  CH   K +SK+  R+I VRD   FH +K+G CSC D  YW
Sbjct:  619 KLKLAGYVPDCGS--VLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRD--YW 722          
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = -1
Query:  528 KMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 812
            +MK  G+   +  +  D S++ K ++  GH+E LA+ +GLI      PI V KN   C   H   K++S +  R+I +++    HHF+DG CSC D
Sbjct:  671 EMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCND 766          
The following BLAST results are available for this feature:
BLAST of CF832336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PP182_ARATH1.317e-1442.59Pentatricopeptide repeat-containing protein At2g33... [more]
PP364_ARATH2.246e-1442.00Pentatricopeptide repeat-containing protein At5g04... [more]
PP363_ARATH1.456e-1341.38Pentatricopeptide repeat-containing protein At5g03... [more]
PP377_ARATH1.902e-1344.05Putative pentatricopeptide repeat-containing prote... [more]
PP122_ARATH4.237e-1345.24Pentatricopeptide repeat-containing protein At1g74... [more]
PPR52_ARATH9.438e-1342.72Pentatricopeptide repeat-containing protein At1g19... [more]
PP346_ARATH9.438e-1338.61Pentatricopeptide repeat-containing protein At4g32... [more]
PP417_ARATH1.233e-1236.19Pentatricopeptide repeat-containing protein At5g44... [more]
PP311_ARATH3.587e-1239.81Pentatricopeptide repeat-containing protein At4g14... [more]
PP297_ARATH6.118e-1235.42Pentatricopeptide repeat-containing protein At4g01... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832336 ID=CF832336; Name=CF832336; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTTTTTTTTTTTGAAATCAATCTACACAATTTTCATTTCCCCTTT
AAGGTAAATTCTACTATATTTCACATGAAATATACCCAAATAAAAAGAAT
AGCACTTTACCTACCTCGCACAACAATCTTGTTTAAATTATATTTTCCCT
TTTGGCAGCAAGAATACAGTGACGCTATATCCATTGGGTGCATACATAAA
AGTACTACACGATACCTTGATGTCAGTTCCATAATCAAAGGGTGTGCAGT
AAATTGAACAGCAAACCAGCTTCTTTCCTTTTCAAGACTGCTGGTTAAAG
CGAGCTGAATAACTGTTCATCAGTGTTTCAAGCTCTTGGTGTTGGGACTA
CGATGTTCTCTGCTTTGCCTGGAATCCTACAATTTAGTTCAAGGGGCCAG
CCACTGCCCAAGTGTACAAGTTTCACCACAACCCTGAAACTCTCATCCTG
TATTTTTGTACAAGTTATAGAATGCTTAAAAAAAATCTTTAGCTCTCTGA
CCTGTCTAGTCTTCCCCAGTAACCCTCATCACCACAAGAGCAGGTTCCAT
CCTTGAAGTGGTGAAAATGTTCAGTATCCCTAACAAAAATGTCTCTGCGT
ACAATCTTGGAGATGAACTTGACAGTGTTGTGACAACTTGGGCATGTATA
GAGATTCTTTGTAACCCAAATAGGCATCCCCGGGGCAGTATTTATGAGGC
CAAATGCCACAGCCAACATCTCACTGTGACCACAAAAGATCTCAGCTTTT
GAAGCTTCACTTTTGTCCATGGACACATATTCTGAACCAGCAAAACCAAC
TGCTTTCATTTTCTCATAAAATCCCTCCCAAAACTGAATTTATTTCCT
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