CF832336
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.317e-14 Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = -1 Query: 516 QFWEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 836 ++ E + K +G+A SE V E K HSE LAVAFGL+ T + I + KNL C CH+ K+IS + R I VRD FHHF++G+CSC D YW Sbjct: 479 RYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLD--YW 583
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14 Identity = 42/100 (42.00%), Postives = 52/100 (52.00%), Query Frame = -1 Query: 516 KMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812 K + G+ S E+ D K E+ HSE LA+ FGL+ P+ + KNL C CH +K S RR I VRD FHHF DG CSCGD +W Sbjct: 538 KFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGD--FW 635
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13 Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = -1 Query: 528 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINT-APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 785 +EYV + E K HS LAV +G++++ G P+ V KN+ C CH K+IS +V+R+I +RD+ FHHF +G CSC D Sbjct: 808 TEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFVNGKCSCRD 894
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13 Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = -1 Query: 528 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMP-IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 776 V +D + K + HSE LA+A+GL+ I + KNL C CH+ +K IS IV+RD+ +RD FHHF G CSCGD Sbjct: 737 VLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGD 820
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13 Identity = 38/84 (45.24%), Postives = 46/84 (54.76%), Query Frame = -1 Query: 516 DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 767 D E K + HSE LA+AF L + G I + KNL C CH +K SK+ +I VRD FH FKDG+CSC D YW Sbjct: 562 DVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRD--YW 643
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13 Identity = 44/103 (42.72%), Postives = 55/103 (53.40%), Query Frame = -1 Query: 516 EKMKAVGFAGSEYVSMDKSEASKAEIFCG-HSEMLAVAFGLINT--APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 EKM + +Y E E CG HSE A+AFGLI++ A I + KNL C CH+T K++SK DI + DT HHFK+G CSC D YW Sbjct: 794 EKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKD--YW 894
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13 Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = -1 Query: 516 EKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 E M +G+ +++ D + SK E H+E A ++T I V KNL C CHN +K +SKIV R++ RD + FHH KDG CSC + YW Sbjct: 439 EHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCRE--YW 537
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12 Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = -1 Query: 516 EGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 827 E E++ +G+ V D S+ +K I H+E LA+AF L+ T I + KNL C CH ++ S++ + I +RD FHHF+ G CSCGD +W Sbjct: 555 EELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGD--FW 657
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.587e-12 Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = -1 Query: 516 KMKAVGFA---GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMP------IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 812 K+K G+ GS V +D E K ++ HSE LA+ FGL+N I + KNL C CH K +SK+ R+I VRD FH +K+G CSC D YW Sbjct: 619 KLKLAGYVPDCGS--VLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRD--YW 722
BLAST of CF832336 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 6.118e-12 Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = -1 Query: 528 KMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 812 +MK G+ + + D S++ K ++ GH+E LA+ +GLI PI V KN C H K++S + R+I +++ HHF+DG CSC D Sbjct: 671 EMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCND 766 The following BLAST results are available for this feature:
BLAST of CF832336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832336 ID=CF832336; Name=CF832336; organism=Citrus sinensis; type=EST; length=848bpback to top |