CF832337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22 Identity = 72/199 (36.18%), Postives = 96/199 (48.24%), Query Frame = 2 Query: 8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFH-PQIKEINSVLEGFYEKMKAVG--FAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDE 595 LL ACR L LGE A Y+LL +LY SGK + K R LM EK L+ G S VEV+G+VH+F+S D + I + +E E++K G + G+E S HS AV +G I +P P+ V KN C CH V ++++V + I VRD H FK+G CSC E Sbjct: 703 LLRACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMTEKRLSKKLGKSTVEVQGKVHSFVSEDVTRVDKTNGIYAEIESIKEEIKRFGSPYRGNENASF-------------HSAKQAVVYGFIYASPEAPVHVVKNKILCKDCHEFVSILTRLVDKKITVRDGNQVHIFKNGECSCKRE 888
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21 Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 2 Query: 302 YEKMKAVGF----AG----SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604 Y K+K++G AG ++YV D E +K + HSE LA+AFG+INT PG I V KNL C CHN +K +S I R+I VRD + FHHF+DG CSCGD YW Sbjct: 133 YVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGD--YW 239
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21 Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 2 Query: 2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 316 G+LL AC++HR + LG+ A + E + + G YVLL N+YA GKW++V VR+ MR++G+T PGCSW++++G H F+ D HP+ K+I+S+L+ +M+ Sbjct: 565 GSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20 Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 2 Query: 2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHP-------QIKEINSVL 292 G LL+AC+IH +ELGE A +FE++ G YVLL NLYA+SGKW E ++R MR+ G+ +PGCS +EV ++H FL GD HP +++E+N +L Sbjct: 428 GTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQELNRIL 531
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20 Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 2 Query: 2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEASK 373 G LL ACR+H+ +EL E+A+ + + D + GYYVL+ N +A + +W+ V KVR LM+E+ + PG SW+E+ H F+SGD HP+ I S+L +++ G+ Y+ + + K Sbjct: 716 GTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIPQPYLPLHPESSRK 839
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20 Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 2 Query: 2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEA 367 GA+L+AC +H + + + + ET + G YVL+ N+YAA+GK +E A++R M+EKGL PGCSWV+V + H F+ GD HPQ + ++S+L KM+ ++ V+ D EA Sbjct: 506 GAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDLRNKMRK-----NKNVTSDAEEA 622
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19 Identity = 65/204 (31.86%), Postives = 96/204 (47.06%), Query Frame = 2 Query: 8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASG----KWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604 L+N R+H LELG+ A + D + N + G K +V K L + G+ VK + F +GD P+ E+ +L M VG+ +++ D + SK + GHSE +A A ++N+AP P V KNL C CHN +K +S IV R++ RD + FH K+G C+C D YW Sbjct: 429 LMNLSRVHGNLELGDYCAEVVEFLDPTRL-------NKQSREGFIPVKASDVEK-ESLKKRSGILHG-------VKSSMQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTCKD--YW 615
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18 Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 335 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604 + +V D + +K + HSE LA+A+G+I T P + + KNL C CHN +K +SKI+ R + VRD + FHHFKDG CSCGD YW Sbjct: 492 TRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGD--YW 579
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18 Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 2 Query: 8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK-AVGFAGSEYVSMDK 358 LLNAC IH ++G+ AA + E + GYYVL+ N+YAA+G W ++A+VR +MR+ G+ DPGC+W++ F GD P+ +L+G + MK G+A ++ S D+ Sbjct: 557 LLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMKDNAGYAINKVQSSDE 674
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP370_ARATH (Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17 Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 2 Query: 2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 316 G LL AC + ++LG A H+ + ++ G +VL+ N+YAA KW+ V ++R LM++K + GCSW+EV G+ + F+SGD HP+ I ++ Y +MK Sbjct: 740 GTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLVNALYLQMK 844 The following BLAST results are available for this feature:
BLAST of CF832337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832337 ID=CF832337; Name=CF832337; organism=Citrus sinensis; type=EST; length=714bpback to top |