CF832338

Overview
NameCF832338
Unique NameCF832338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.056e-20
Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = -2
Query:  516 LEGFYEKMKA----VGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            +E F  K++A     G++  ++Y  +D  E  K E  CGHSE LA+A G+I++  G  I VTKNL  C  CH   KF+SK+ RR+I +RD+  FH FKDG CSC   G+W
Sbjct:  764 IEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSC--RGFW 871          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.685e-20
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = -2
Query:  516 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 776
            V  D SE  K E   GHSE LA+ +GLI T+ G  I V KNL  C  CHN  K ISK++ R+I VRD + FHHFK+G CSCGD  YW
Sbjct:  886 VQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGD--YW 970          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.685e-20
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  516 EKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            E MK  G+   ++ V  +     K  I  GHSE LA+AFGLINT+ G PI +TKNL  C  CH   KFISK + ++I VRD   FH FK+G CSCGD  YW
Sbjct:  559 EDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGD--YW 657          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.685e-20
Identity = 50/87 (57.47%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  516 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 776
            V  D  E  K E    HSE LAVAF LI+T  G PI V KNL  C  CH  +K ISKIV+R+I VRDT  FHHF +G CSCGD  YW
Sbjct:  741 VVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGD--YW 825          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.580e-20
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = -2
Query:  516 EKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            +K++  G+   +  V ++  E  K  +   HSE +A AFGLI+T+PG PI + KNL  C  CH+++K ISK+ +R I VRD + FHHF+DG+CSC D  YW
Sbjct:  548 DKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMD--YW 646          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.580e-20
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -2
Query:  516 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 785
            +++  +D  E  K      HSE LAVAFGL++T P  PI V KNL  C  CHN +K+I+K+  R+I +RD   FH FKDG CSCGD  YW
Sbjct:  903 TDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD--YW 990          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.982e-20
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = -2
Query:  516 EKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815
            E ++  G++ +  V + D  E +KA   CGHSE LA  + LI+T  G+PI +TKNL  C  CH+ +K +S++ RR I +RDT+ FHHF DG CSC D  YW
Sbjct:  612 EAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKD--YW 710          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 7.812e-20
Identity = 49/106 (46.23%), Postives = 60/106 (56.60%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSE-YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            L     K+K +G+     +V  D  +  K  I   HSE LA+AF LI T     I + KNL  C  CH+  KFISKI  R+I VRD+  FHHFK+G CSCGD  YW
Sbjct:  720 LTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGD--YW 823          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.812e-20
Identity = 51/106 (48.11%), Postives = 60/106 (56.60%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFCG-HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            LE    KM+  G+     +++   E  + E+    HSE LA+AFGLI T PG  I + KNL  C  CH   K ISKI  R I VRD   FHHFKDG CSCGD  YW
Sbjct:  689 LEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGD--YW 792          
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.020e-19
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  516 LEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830
            ++  ++++K +G+   +  V  D  E  K +I   HSE LA+AFGLI+T     + + KNL  C  CH  +KFISK+V R+I VRDT  FHHFKDG CSC D  YW
Sbjct:  683 MKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRD--YW 786          
The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PP320_ARATH2.056e-2045.45Pentatricopeptide repeat-containing protein At4g18... [more]
PPR48_ARATH2.685e-2055.17Pentatricopeptide repeat-containing protein At1g18... [more]
PP265_ARATH2.685e-2050.50Pentatricopeptide repeat-containing protein At3g46... [more]
PP206_ARATH2.685e-2057.47Putative pentatricopeptide repeat-containing prote... [more]
PP425_ARATH4.580e-2045.54Pentatricopeptide repeat-containing protein At5g48... [more]
PP347_ARATH4.580e-2050.00Pentatricopeptide repeat-containing protein At4g33... [more]
PP229_ARATH5.982e-2046.53Pentatricopeptide repeat-containing protein At3g14... [more]
PP348_ARATH7.812e-2046.23Pentatricopeptide repeat-containing protein At4g33... [more]
PP341_ARATH7.812e-2048.11Pentatricopeptide repeat-containing protein At4g30... [more]
PP168_ARATH1.020e-1946.23Pentatricopeptide repeat-containing protein At2g22... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTTTGAAATCAATCTACACAATTTTCATTTCACCTTT
AAGGTAAATTCTACTATATTTCACATGAAATATACATAAATAAAAAGAAT
AGCACTTTACCTACCTCGCACAACAATCTTGTTTAAATTATATTTTCCCT
TTTGGCAGCAAGAATACAGTGACGCTATATCCATTGGGTGCATACATAAA
AGTACTACACGATACCTTGATGTCAGTTCCATAATCAAAGGGTGTGCAGT
AAATTGAACAGCAAACCAGCTTCTTTCCTTTTCAAGACTGCTGGTTAAAG
CGAGCTGAATAACTGTTCATCAGTGTTTCAAGCTCTTGGAGTTGGGACTA
CGATGTTCTCTGCTTTGCCTGGAATCCTACAATTTAGTTCAAGGGGCCAG
CCACTGCCCAAGTGTACAAGTTTCACCACAACCCTGAAACTCTCATCCTG
TATTTTTGTACAAGTTATAGAATGCTTAAAAAAAATCTTTAGCTCTCTGA
CCTGTCTAGTCTTCCCCAGTAACCCTCATCACCACAAGAGCAGGTTCCAT
CCTTGAAGTGGTGAAAATGTTCAGTATCCCTAACAAAAATGTCTCTGCGT
ACAATCTTGGAGATGAACTTGACAGTGTTGTGACAACTTGGGCATGTATA
GAGATTCTTTGTAACCCAAATAGGCATCCCCGGGGCAGTATTTATGAGGC
CAAATGCCACAGCCAACATCTCACTGTGACCACAAAAGATCTCAGCTTTT
GAAGCTTCACTTTTGTCCATGGACACATATTCTGAACCAGCAAAACCAAC
TGCTTTCATTTTCTCATAAAATCCCTCCAAAACT
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