CF832338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.056e-20 Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = -2 Query: 516 LEGFYEKMKA----VGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 +E F K++A G++ ++Y +D E K E CGHSE LA+A G+I++ G I VTKNL C CH KF+SK+ RR+I +RD+ FH FKDG CSC G+W Sbjct: 764 IEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSC--RGFW 871
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.685e-20 Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = -2 Query: 516 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 776 V D SE K E GHSE LA+ +GLI T+ G I V KNL C CHN K ISK++ R+I VRD + FHHFK+G CSCGD YW Sbjct: 886 VQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGD--YW 970
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.685e-20 Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = -2 Query: 516 EKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 E MK G+ ++ V + K I GHSE LA+AFGLINT+ G PI +TKNL C CH KFISK + ++I VRD FH FK+G CSCGD YW Sbjct: 559 EDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGD--YW 657
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.685e-20 Identity = 50/87 (57.47%), Postives = 55/87 (63.22%), Query Frame = -2 Query: 516 VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 776 V D E K E HSE LAVAF LI+T G PI V KNL C CH +K ISKIV+R+I VRDT FHHF +G CSCGD YW Sbjct: 741 VVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGD--YW 825
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.580e-20 Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = -2 Query: 516 EKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 +K++ G+ + V ++ E K + HSE +A AFGLI+T+PG PI + KNL C CH+++K ISK+ +R I VRD + FHHF+DG+CSC D YW Sbjct: 548 DKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMD--YW 646
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.580e-20 Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -2 Query: 516 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 785 +++ +D E K HSE LAVAFGL++T P PI V KNL C CHN +K+I+K+ R+I +RD FH FKDG CSCGD YW Sbjct: 903 TDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD--YW 990
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 5.982e-20 Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = -2 Query: 516 EKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 815 E ++ G++ + V + D E +KA CGHSE LA + LI+T G+PI +TKNL C CH+ +K +S++ RR I +RDT+ FHHF DG CSC D YW Sbjct: 612 EAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKD--YW 710
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 7.812e-20 Identity = 49/106 (46.23%), Postives = 60/106 (56.60%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSE-YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 L K+K +G+ +V D + K I HSE LA+AF LI T I + KNL C CH+ KFISKI R+I VRD+ FHHFK+G CSCGD YW Sbjct: 720 LTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGD--YW 823
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.812e-20 Identity = 51/106 (48.11%), Postives = 60/106 (56.60%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFCG-HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 LE KM+ G+ +++ E + E+ HSE LA+AFGLI T PG I + KNL C CH K ISKI R I VRD FHHFKDG CSCGD YW Sbjct: 689 LEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGD--YW 792
BLAST of CF832338 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.020e-19 Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = -2 Query: 516 LEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 830 ++ ++++K +G+ + V D E K +I HSE LA+AFGLI+T + + KNL C CH +KFISK+V R+I VRDT FHHFKDG CSC D YW Sbjct: 683 MKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRD--YW 786 The following BLAST results are available for this feature:
BLAST of CF832338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832338 ID=CF832338; Name=CF832338; organism=Citrus sinensis; type=EST; length=834bpback to top |