CF832339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 3.913e-45 Identity = 90/201 (44.78%), Postives = 124/201 (61.69%), Query Frame = 1 Query: 4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 SL AC++H +ELGE A ++ + + + G YVLL N+YA++G+W+EVAK R L+ +KG+ PGCS +E+ VH F+ GD FHP+ +EI +LE ++ GF + V + E K HSE LA+AFGLI+T PG + + KNL C +CH K ISKI +R+I RD FHHF+DG CSC D YW Sbjct: 543 SLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCND--YW 741
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.139e-44 Identity = 85/202 (42.08%), Postives = 134/202 (66.34%), Query Frame = 1 Query: 4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMD-KSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 +L CR+H +ELG +AA +F H G Y+LL N++AA+G+W+EVA+VR+LMR++G+ + CSW+E++ +VH FL D HP+ + + L+ ++M+ +G+ + +V D +S+ K ++ HSE +AVAFGL+ PG I + KNL TC CHN +F+S +V+RDI +RD + FHHF++G CSCG+ +W Sbjct: 591 ALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGN--FW 790
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2) HSP 1 Score: 179.874 bits (455), Expect = 1.139e-44 Identity = 94/201 (46.77%), Postives = 121/201 (60.20%), Query Frame = 1 Query: 4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEY-VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 SL +CRIH+ LE+GE A +FE + YVLL NLYA GKW++V KVR+ M E L D GCSW+E+ +V +F+ G+ F +EI S+ K+ +G+ V D SE K E GHSE LA+ +GLI T+ G I V KNL C CHN K ISK++ R+I VRD + FHHFK+G CSCGD YW Sbjct: 772 SLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGD--YW 970
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.487e-44 Identity = 88/201 (43.78%), Postives = 120/201 (59.70%), Query Frame = 1 Query: 1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 G++ AC+IH+ + E AA +FE + GY+VLL N+Y A+ W++V +VR M +GL PGCS VE+K EVH+F SG HP K+I + LE +K G+ + + K ++ HSE LA++FGL+NT G I V KNL C CHN K+IS + R+I VRD + FHHFK+G CSCGD YW Sbjct: 611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGD--YW 809
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2) HSP 1 Score: 179.104 bits (453), Expect = 1.942e-44 Identity = 89/207 (43.00%), Postives = 127/207 (61.35%), Query Frame = 1 Query: 1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTID-----PGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 G+L ACR+H+ +EL E AA + + ++++ YV L N+YA+ +W++VA+VR+ M+E + PG SW+E++ +VH F S D HP++ I+ L+ +KMK G+ E+ + E K ++ HSE LAVAFG I G I V KNL C CH +KFIS+I +R+I VRDT FHHFKDG+CSCGD YW Sbjct: 457 GTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGD--YW 661
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.536e-44 Identity = 91/202 (45.05%), Postives = 121/202 (59.90%), Query Frame = 1 Query: 4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHF-KDGTCSCGDEGYW 603 ++ ACR+H+ ELG LAA I YVLL N+YA SG W E AKVR+LM E+ + +PG SW+EVK + ++FL+GD HP +I LE ++K +G+ + YV D + K + HSE LA+AFGLI T G P+ + KNL C CH +K I+KI R+I VRD+ FHHF DG CSCGD +W Sbjct: 669 TILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGD--FW 868
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 4.326e-44 Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = 1 Query: 1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 GSL ACR+H+ ++LG++AA + + + G Y L NLY+A GKW+E AK+R+ M++ + + G SW+EVK +VH F D HP+ EI ++ ++++K +G+ + V D E K +I HSE LA+AFGLI+T + + KNL C CH +KFISK+V R+I VRDT FHHFKDG CSC D YW Sbjct: 587 GSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRD--YW 786
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 5.650e-44 Identity = 91/201 (45.27%), Postives = 123/201 (61.19%), Query Frame = 1 Query: 4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 +L ACR+H ++ GE AA IF D++ YVLL N+YA++G+W V+K+R M++ G+ PG SWV ++G+ H F SGD P I LE EK+K +G+A ++ D + K E+ HSE LA+AFGLINT G + V KNL C CH +K IS +V R+I +RD FHHFK+GTCSCGD YW Sbjct: 501 ALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQ--PHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGD--YW 697
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 5.650e-44 Identity = 90/202 (44.55%), Postives = 129/202 (63.86%), Query Frame = 1 Query: 1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 GSL +CRIH +EL E A+ +F + ++ G YVLL ++YA + WDEV +V++L+ +GL PG W+EV+ ++++F+S D F+P +++I++ L E MK G+ ++ V + K I GHSE LA+AFGLINT+ G PI +TKNL C CH KFISK + ++I VRD FH FK+G CSCGD YW Sbjct: 458 GSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGD--YW 657
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 7.380e-44 Identity = 87/201 (43.28%), Postives = 118/201 (58.71%), Query Frame = 1 Query: 16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDK-----SEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 ACR+H ELG+LAA I E D Y+ L N+YA +GKW+E ++RR M+E+ L + GCSW+EV ++H F GD HP +I L+ ++K G+ + + K EA K + HSE +AVAFGLI+T+ P+ V KNL C CHN +K+IS + R+I +RD FHHFKDG CSC D YW Sbjct: 652 ACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCND--YW 850 The following BLAST results are available for this feature:
BLAST of CF832339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832339 ID=CF832339; Name=CF832339; organism=Citrus sinensis; type=EST; length=692bpback to top |