CF832339

Overview
NameCF832339
Unique NameCF832339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.913e-45
Identity = 90/201 (44.78%), Postives = 124/201 (61.69%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            SL  AC++H  +ELGE  A ++ + +  + G YVLL N+YA++G+W+EVAK R L+ +KG+   PGCS +E+   VH F+ GD FHP+ +EI  +LE     ++  GF   +  V  +  E  K      HSE LA+AFGLI+T PG  + + KNL  C +CH   K ISKI +R+I  RD   FHHF+DG CSC D  YW
Sbjct:  543 SLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCND--YW 741          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.139e-44
Identity = 85/202 (42.08%), Postives = 134/202 (66.34%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMD-KSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            +L   CR+H  +ELG +AA  +F     H G Y+LL N++AA+G+W+EVA+VR+LMR++G+  +  CSW+E++ +VH FL  D  HP+ + +   L+   ++M+ +G+   + +V  D +S+  K ++   HSE +AVAFGL+   PG  I + KNL TC  CHN  +F+S +V+RDI +RD + FHHF++G CSCG+  +W
Sbjct:  591 ALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGN--FW 790          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.139e-44
Identity = 94/201 (46.77%), Postives = 121/201 (60.20%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEY-VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            SL  +CRIH+ LE+GE  A  +FE +      YVLL NLYA  GKW++V KVR+ M E  L  D GCSW+E+  +V +F+ G+ F    +EI S+      K+  +G+      V  D SE  K E   GHSE LA+ +GLI T+ G  I V KNL  C  CHN  K ISK++ R+I VRD + FHHFK+G CSCGD  YW
Sbjct:  772 SLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGD--YW 970          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.487e-44
Identity = 88/201 (43.78%), Postives = 120/201 (59.70%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            G++  AC+IH+ +   E AA  +FE +    GY+VLL N+Y A+  W++V +VR  M  +GL   PGCS VE+K EVH+F SG   HP  K+I + LE     +K  G+     + +      K ++   HSE LA++FGL+NT  G  I V KNL  C  CHN  K+IS +  R+I VRD + FHHFK+G CSCGD  YW
Sbjct:  611 GAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGD--YW 809          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.942e-44
Identity = 89/207 (43.00%), Postives = 127/207 (61.35%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTID-----PGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            G+L  ACR+H+ +EL E AA  + + ++++   YV L N+YA+  +W++VA+VR+ M+E  +        PG SW+E++ +VH F S D  HP++  I+  L+   +KMK  G+    E+   +  E  K ++   HSE LAVAFG I    G  I V KNL  C  CH  +KFIS+I +R+I VRDT  FHHFKDG+CSCGD  YW
Sbjct:  457 GTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGD--YW 661          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.536e-44
Identity = 91/202 (45.05%), Postives = 121/202 (59.90%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHF-KDGTCSCGDEGYW 603
            ++  ACR+H+  ELG LAA  I          YVLL N+YA SG W E AKVR+LM E+ +  +PG SW+EVK + ++FL+GD  HP   +I   LE    ++K +G+   + YV  D  +  K  +   HSE LA+AFGLI T  G P+ + KNL  C  CH  +K I+KI  R+I VRD+  FHHF  DG CSCGD  +W
Sbjct:  669 TILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGD--FW 868          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.326e-44
Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            GSL  ACR+H+ ++LG++AA  +   +  + G Y  L NLY+A GKW+E AK+R+ M++  +  + G SW+EVK +VH F   D  HP+  EI   ++  ++++K +G+   +  V  D  E  K +I   HSE LA+AFGLI+T     + + KNL  C  CH  +KFISK+V R+I VRDT  FHHFKDG CSC D  YW
Sbjct:  587 GSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRD--YW 786          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.650e-44
Identity = 91/201 (45.27%), Postives = 123/201 (61.19%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            +L  ACR+H  ++ GE AA  IF  D++    YVLL N+YA++G+W  V+K+R  M++ G+   PG SWV ++G+ H F SGD   P    I   LE   EK+K +G+A     ++ D  +  K E+   HSE LA+AFGLINT  G  + V KNL  C  CH  +K IS +V R+I +RD   FHHFK+GTCSCGD  YW
Sbjct:  501 ALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQ--PHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGD--YW 697          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.650e-44
Identity = 90/202 (44.55%), Postives = 129/202 (63.86%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            GSL  +CRIH  +EL E A+  +F  + ++ G YVLL ++YA +  WDEV +V++L+  +GL   PG  W+EV+ ++++F+S D F+P +++I++ L    E MK  G+   ++ V  +     K  I  GHSE LA+AFGLINT+ G PI +TKNL  C  CH   KFISK + ++I VRD   FH FK+G CSCGD  YW
Sbjct:  458 GSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGD--YW 657          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.380e-44
Identity = 87/201 (43.28%), Postives = 118/201 (58.71%), Query Frame = 1
Query:   16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDK-----SEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            ACR+H   ELG+LAA  I E D      Y+ L N+YA +GKW+E  ++RR M+E+ L  + GCSW+EV  ++H F  GD  HP   +I   L+    ++K  G+     + + K      EA K  +   HSE +AVAFGLI+T+   P+ V KNL  C  CHN +K+IS +  R+I +RD   FHHFKDG CSC D  YW
Sbjct:  652 ACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCND--YW 850          
The following BLAST results are available for this feature:
BLAST of CF832339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
PPR21_ARATH3.913e-4544.78Pentatricopeptide repeat-containing protein At1g08... [more]
PPR57_ARATH1.139e-4442.08Pentatricopeptide repeat-containing protein At1g25... [more]
PPR48_ARATH1.139e-4446.77Pentatricopeptide repeat-containing protein At1g18... [more]
PPR32_ARATH1.487e-4443.78Pentatricopeptide repeat-containing protein At1g11... [more]
PP316_ARATH1.942e-4443.00Pentatricopeptide repeat-containing protein At4g16... [more]
PP172_ARATH2.536e-4445.05Pentatricopeptide repeat-containing protein At2g27... [more]
PP168_ARATH4.326e-4444.06Pentatricopeptide repeat-containing protein At2g22... [more]
PP419_ARATH5.650e-4445.27Pentatricopeptide repeat-containing protein At5g46... [more]
PP265_ARATH5.650e-4444.55Pentatricopeptide repeat-containing protein At3g46... [more]
PP272_ARATH7.380e-4443.28Pentatricopeptide repeat-containing protein At3g49... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832339 ID=CF832339; Name=CF832339; organism=Citrus sinensis; type=EST; length=692bp
GGGAGCCTTACCATTGCATGCAGGATTCATCGATGGCTTGAGCTTGGGGA
ACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTATT
ACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGTT
GCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCGG
GTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGTG
ACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATTT
TATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCAT
GGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAGA
TGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTATT
TGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCAA
GTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAAC
ATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTAC
TGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTCT
ATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTG
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