CF832339
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP308_ARATH (Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3) HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31 Identity = 73/203 (35.96%), Postives = 111/203 (54.68%), Query Frame = 1 Query: 4 SLTIACRIHRWLELGELAAGHIFET-DTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVG--FAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 +L AC+ ++G A H+ + + Y+LL N+YA++ W +V++ RR + E + DPG S VEV+ E F +G+ HP ++I +L+ E+M+ + ++ D E K ++ HSE AVA+GL+ PG PI + KNL C CH +K IS+I R+I VRD +HHFK G CSC D +W Sbjct: 412 ALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCND--FW 612
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP363_ARATH (Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.596e-30 Identity = 72/198 (36.36%), Postives = 106/198 (53.54%), Query Frame = 1 Query: 4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINT-APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 591 +L +CRIH + + A I T Y+L N+Y+ASG W +R MRE+G P SW+ + ++H+F + D HPQ K+I LE + VG+ +EYV + E K HS LAV +G++++ G P+ V KN+ C CH K+IS +V+R+I +RD+ FHHF +G CSC D Sbjct: 697 ALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASGFWHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLKVGYEPNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFVNGKCSCRD 894
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.722e-30 Identity = 74/208 (35.58%), Postives = 110/208 (52.88%), Query Frame = 1 Query: 1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEY-------VSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 G+L A R+H +E+ A+ + +++ + Y+ L N YA SG W++ +R M+ G + CSW+E K V+ F +GD + EI L+ ++MK G GS V +D E +K E+ H E LA+A+GL++ G I + NL C CH K IS+IV R+I VRD FH FK+G+C+C D YW Sbjct: 411 GALLSAGRLHGRVEIVSEASKRLIQSNQQVTSAYIALSNAYAVSGGWEDSESLRLEMKRSGNVKERACSWIENKDSVYVFHAGDLSCDESGEIERFLKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRD--YW 616
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP232_ARATH (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.722e-30 Identity = 76/205 (37.07%), Postives = 106/205 (51.71%), Query Frame = 1 Query: 4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK-AVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLIN---TAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 +L CR+H +ELG+ + D ++ YV++ NLY +G W+E R L KGL + G SWVE++ EVH F SG++ HP I L+ +++ +G+ G ++ D + SK E HSE LA+ L G I V KNL C CH +K +SKI + VRD FH F+DG CSCGD YW Sbjct: 487 TLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGD--YW 689
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.556e-30 Identity = 70/197 (35.53%), Postives = 106/197 (53.81%), Query Frame = 1 Query: 16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 AC+ H+ E + ++ E D G Y+ L +A+ G +V K R ++++ G S++E+ G+++ F +GD H +EI L+ G+ G+++ D E K + HSE LA+ G + TAPG I + KNL C CH+ +K++SKI +RDI +RD FHHFKDG CSCGD YW Sbjct: 471 ACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGD--YW 665
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30 Identity = 76/204 (37.25%), Postives = 111/204 (54.41%), Query Frame = 1 Query: 1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEA---SKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 GSL A R H+ + + E AA IF+ + + G YVLL N+YA +G+W++V +++ LM KG++ S VE KG+ H F +GD H +I VL+ +M VS + E S++ HS LA FGLI+T G + V N C CH ++ S++ RR+I V D++ FHHF +G CSCG+ YW Sbjct: 604 GSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLD-VVSRMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGN--YW 804
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29 Identity = 63/198 (31.82%), Postives = 105/198 (53.03%), Query Frame = 1 Query: 1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 591 G+ +C+IHR LEL E+A + + + Y+++ NLY+ +W++V ++R LMR + + SW+++ VH F + HP +I L +MK G+ + + D S++ K ++ GH+E LA+ +GLI PI V KN C H K++S + R+I +++ HHF+DG CSC D Sbjct: 569 GAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCND 766
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24 Identity = 71/198 (35.86%), Postives = 96/198 (48.48%), Query Frame = 1 Query: 16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSM--DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 AC H +EL E + E D + G VLL N YA +GKW +VA +R+ M + + S VEV ++ F +G+ E + L+ ++K E S D E K + HSE LA+AF L + G I + KNL C CH +K SK+ +I VRD FH FKDG+CSC D YW Sbjct: 448 ACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRD--YW 643
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23 Identity = 70/203 (34.48%), Postives = 98/203 (48.28%), Query Frame = 1 Query: 4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFCG-HSEMLAVAFGLINT--APGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 S CRIH +++ AA ++F + + ++ +YA K + + R+ L G SW+EV+ +H F +GD Q K VL EKM + +Y E E CG HSE A+AFGLI++ A I + KNL C CH+T K++SK DI + DT HHFK+G CSC D YW Sbjct: 698 SFLTGCRIHGDIDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQSWIEVRNLIHTFTTGD----QSKLCTDVLYPLVEKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKD--YW 894
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP114_ARATH (Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22 Identity = 64/204 (31.37%), Postives = 100/204 (49.02%), Query Frame = 1 Query: 16 ACRIHRWLELGELAAGHIFE-TDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMD-KSEASKAEIFCGHSEMLAVAFGLINTAPGMP-----IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603 +CR H LG+LAA + E + + Y+ + N+Y A G ++E + M + +P SW E+ +VH F SG P + + L+ +K +G+ S D + E + + HSE LA+AF ++ I + KN C CHN +K SK++ ++I +RD+ FHHFKD +CSC D YW Sbjct: 544 SCRKHGNTRLGKLAADKLKELVEPTNSMSYIQMSNIYNAEGSFNEANLSIKEMETWRVRKEPDLSWTEIGNKVHEFASGGRHRPDKEAVYRELKRLISWLKEMGYVPEMRSASQDIEDEEQEEDNLLHHSEKLALAFAVMEGRKSSDCGVNLIQIMKNTRICIDCHNFMKLASKLLGKEILMRDSNRFHHFKDSSCSCND--YW 745 The following BLAST results are available for this feature:
BLAST of CF832339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832339 ID=CF832339; Name=CF832339; organism=Citrus sinensis; type=EST; length=692bpback to top |