CF832339

Overview
NameCF832339
Unique NameCF832339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.037e-21
Identity = 71/200 (35.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFH-PQIKEINSVLEGFYEKMKAVG--FAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDE 594
            +L  ACR    L LGE  A             Y+LL +LY  SGK +   K R LM EK L+   G S VEV+G+VH+F+S D     +   I + +E   E++K  G  + G+E  S              HS   AV +G I  +P  P+ V KN   C  CH  V  ++++V + I VRD    H FK+G CSC  E
Sbjct:  702 TLLRACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMTEKRLSKKLGKSTVEVQGKVHSFVSEDVTRVDKTNGIYAEIESIKEEIKRFGSPYRGNENASF-------------HSAKQAVVYGFIYASPEAPVHVVKNKILCKDCHEFVSILTRLVDKKITVRDGNQVHIFKNGECSCKRE 888          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  301 YEKMKAVGF----AG----SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            Y K+K++G     AG    ++YV  D  E +K +    HSE LA+AFG+INT PG  I V KNL  C  CHN +K +S I  R+I VRD + FHHF+DG CSCGD  YW
Sbjct:  133 YVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGD--YW 239          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 45/105 (42.86%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 315
            GSL  AC++HR + LG+  A  + E +  + G YVLL N+YA  GKW++V  VR+ MR++G+T  PGCSW++++G  H F+  D  HP+ K+I+S+L+    +M+
Sbjct:  565 GSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.705e-20
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHP-------QIKEINSVL 291
            G+L  AC+IH  +ELGE  A  +FE++    G YVLL NLYA+SGKW E  ++R  MR+ G+  +PGCS +EV  ++H FL GD  HP       +++E+N +L
Sbjct:  428 GTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQELNRIL 531          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 44/124 (35.48%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEASK 372
            G+L  ACR+H+ +EL E+A+  + + D  + GYYVL+ N +A + +W+ V KVR LM+E+ +   PG SW+E+    H F+SGD  HP+   I S+L     +++  G+    Y+ +    + K
Sbjct:  716 GTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIPQPYLPLHPESSRK 839          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 48/130 (36.92%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  217 VKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            VK  +  F +GD   P+  E+  +L      M  VG+     +++ D  + SK  +  GHSE +A A  ++N+AP  P  V KNL  C  CHN +K +S IV R++  RD + FH  K+G C+C D  YW
Sbjct:  488 VKSSMQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTCKD--YW 615          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 46/122 (37.70%), Postives = 72/122 (59.02%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEA 366
            G++  AC +H  + + +     + ET +   G YVL+ N+YAA+GK +E A++R  M+EKGL   PGCSWV+V  + H F+ GD  HPQ + ++S+L     KM+      ++ V+ D  EA
Sbjct:  506 GAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDLRNKMRK-----NKNVTSDAEEA 622          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  334 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            + +V  D  + +K +    HSE LA+A+G+I T P   + + KNL  C  CHN +K +SKI+ R + VRD + FHHFKDG CSCGD  YW
Sbjct:  492 TRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGD--YW 579          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP370_ARATH (Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 315
            G+L  AC  +  ++LG   A H+ + ++   G +VL+ N+YAA  KW+ V ++R LM++K +    GCSW+EV G+ + F+SGD  HP+   I  ++   Y +MK
Sbjct:  740 GTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLVNALYLQMK 844          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK-AVGFAGSEYVSMDK 357
            +L  AC IH   ++G+ AA  + E    + GYYVL+ N+YAA+G W ++A+VR +MR+ G+  DPGC+W++       F  GD   P+      +L+G  + MK   G+A ++  S D+
Sbjct:  556 TLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMKDNAGYAINKVQSSDE 674          
The following BLAST results are available for this feature:
BLAST of CF832339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
PP430_ARATH1.037e-2135.50Pentatricopeptide repeat-containing protein At5g52... [more]
PPR74_ARATH1.354e-2149.54Pentatricopeptide repeat-containing protein At1g47... [more]
PP151_ARATH1.769e-2142.86Pentatricopeptide repeat-containing protein At2g13... [more]
PP435_ARATH9.705e-2045.19Putative pentatricopeptide repeat-containing prote... [more]
PP333_ARATH2.162e-1935.48Pentatricopeptide repeat-containing protein At4g21... [more]
PP170_ARATH6.291e-1936.92Pentatricopeptide repeat-containing protein At2g25... [more]
PP185_ARATH8.216e-1937.70Pentatricopeptide repeat-containing protein At2g35... [more]
PP153_ARATH1.830e-1846.67Pentatricopeptide repeat-containing protein At2g15... [more]
PP370_ARATH1.312e-1637.14Putative pentatricopeptide repeat-containing prote... [more]
PP116_ARATH1.312e-1636.13Pentatricopeptide repeat-containing protein At1g71... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832339 ID=CF832339; Name=CF832339; organism=Citrus sinensis; type=EST; length=692bp
GGGAGCCTTACCATTGCATGCAGGATTCATCGATGGCTTGAGCTTGGGGA
ACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTATT
ACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGTT
GCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCGG
GTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGTG
ACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATTT
TATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCAT
GGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAGA
TGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTATT
TGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCAA
GTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAAC
ATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTAC
TGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTCT
ATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTG
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