CF832339

Overview
NameCF832339
Unique NameCF832339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGE--VHAFLSGDNFHPQIKEINSVL 291
            SL  +C   R  EL +  +  + E++  + G YV + N YA  G WDEV K+R +M+ KGL   PGCSW+++ GE  VH F++ D  H +I EI  +L
Sbjct:  721 SLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEIQMML 818          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP231_ARATH (Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMD 354
            S+  +CR+H   +L  +A   + E +  H G YVL+ N+Y  +GK++EV  VR  MR++ +   PGCSW+ +K  VH F +G+  HP+ K I+  L      M      G EY+++D
Sbjct:  541 SILSSCRLHGNKDLALVAGKRLHELEPEHCGGYVLMSNVYVEAGKYEEVLDVRDAMRQQNVKKTPGCSWIVLKNGVHTFFTGNQTHPEFKSIHDWLSLVISHMH-----GHEYMTVD 652          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 315
            SL  ACRIH     GE++A  + E + ++   YVLL N+YA+ G W++   +R++MR++G+   PG SW++V+   H F +GD  H +I +I   LE  Y+ MK
Sbjct:  907 SLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMFLEDLYDLMK 1010          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   19 CRIHRW-LELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFC 387
            C IHR  +E+ E A   +   D +    Y LL N+YA +G W++V+ +RR MR   L  +PGCSWVE+K E+H FL GD  HP+ +EI   L   Y +MK   F  S +V   + E      +C
Sbjct:  782 CTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKP--FDDSSFVRGVEVEEEDQWCYC 903          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 47/111 (42.34%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHI--FETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF 327
            GSL  +C++H  LEL E  +  +  F+      GY VLL N+YA   KW  V KVRR MREKGL  + G S +E+ G V+ F+S D  HP   EI  V++G  + M+   F
Sbjct:  695 GSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDMRGDSF 805          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  244 SGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            +GD   P+ +E+   L+   E M  +G+     +++ D  + SK E    H+E  A     ++T     I V KNL  C  CHN +K +SKIV R++  RD + FHH KDG CSC +  YW
Sbjct:  419 AGDISRPENRELYMALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCRE--YW 537          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP205_ARATH (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 36/105 (34.29%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 315
            G+L  ACRIH+  E+ E  A  +FE ++ H GYY+L+ N+Y   G+W+ V K+R  ++++G+      S +E++ +VH F++ D  HP+ + +  +L+     MK
Sbjct:  540 GTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKELDLHMK 644          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHP 264
            G+L  +C +H+  ELG+ AA  + +    H G Y LL NLY+ S  WDEVA+VR+ M+++ +   PG SW+EVKG++  F++ D+  P
Sbjct:  479 GALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKP 566          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP433_ARATH (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLE 294
            GSL  A  +H  LELGE A   + + +  + G Y+LL NLY+  G+WDE   +R +M+  G+    G S +EV+  V+ F+SGD  HPQ++ I+ +L+
Sbjct:  423 GSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVERIHEILQ 520          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGF 300
            GSL  +CR    L++  +A  H+ E +   +G YVLL N+YA  GKW++V+++R+++R + +   PG S +EV   V  F+SGDN  P   EI+ VL+ F
Sbjct:  414 GSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLF 513          
The following BLAST results are available for this feature:
BLAST of CF832339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
PP431_ARATH2.922e-1640.82Pentatricopeptide repeat-containing protein At5g55... [more]
PP231_ARATH2.922e-1635.90Pentatricopeptide repeat-containing protein At3g14... [more]
PP220_ARATH3.817e-1639.42Pentatricopeptide repeat-containing protein At3g09... [more]
PP207_ARATH3.817e-1639.52Pentatricopeptide repeat-containing protein At3g02... [more]
PP246_ARATH6.510e-1642.34Pentatricopeptide repeat-containing protein At3g22... [more]
PP346_ARATH1.450e-1536.36Pentatricopeptide repeat-containing protein At4g32... [more]
PP205_ARATH5.511e-1534.29Putative pentatricopeptide repeat-containing prote... [more]
PPR75_ARATH7.198e-1542.05Pentatricopeptide repeat-containing protein At1g50... [more]
PP433_ARATH1.228e-1439.80Pentatricopeptide repeat-containing protein At5g56... [more]
PP165_ARATH2.735e-1440.00Pentatricopeptide repeat-containing protein At2g20... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832339 ID=CF832339; Name=CF832339; organism=Citrus sinensis; type=EST; length=692bp
GGGAGCCTTACCATTGCATGCAGGATTCATCGATGGCTTGAGCTTGGGGA
ACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTATT
ACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGTT
GCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCGG
GTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGTG
ACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATTT
TATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCAT
GGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAGA
TGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTATT
TGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCAA
GTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAAC
ATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTAC
TGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTCT
ATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTG
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