CF832355

Overview
NameCF832355
Unique NameCF832355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_THEAN (40S ribosomal protein SA OS=Theileria annulata GN=TA10185 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.409e-61
Identity = 110/199 (55.28%), Postives = 146/199 (73.37%), Query Frame = 3
Query:   24 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            +L+  E  I+MML A+VH+GTKN + +M +YV+ R  +G+++INL  T EKL++AAR IV + NP +++V SARPYG RAVLKF+ Y  +H IAGR  PGT TNQ+   F EPRLL+ TDPRTD Q +KE++  ++P IA CDTDSP+ YVDI IP NNKGK SI  ++WLLAR VL +R  ++    WDV+VD FF+R
Sbjct:    7 KLTPDEDSIRMMLTAKVHIGTKNVENKMRKYVYSRTQEGVHLINLAHTLEKLKVAARAIVTVSNPEEVVVVSARPYGSRAVLKFSHYVGSHPIAGRWIPGTLTNQITQKFIEPRLLVATDPRTDAQSLKESSYVSLPVIALCDTDSPLNYVDIAIPCNNKGKESIALMYWLLAREVLYLRDQLKRWMPWDVLVDTFFWR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_LODEL (40S ribosomal protein S0 OS=Lodderomyces elongisporus GN=RPS0 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.409e-61
Identity = 117/203 (57.64%), Postives = 145/203 (71.43%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYR 620
            LP        D +++LAA VHLG+KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I A+ N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL++RG I     +W VM DL+FYR
Sbjct:    3 LPASFDLTPEDAKLLLAANVHLGSKNVQVHNKPYVYKTRPDGVNIINIGKTWEKIVLAARIIAAVPNSSDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRLRGIIADRTTEWSVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_PICST (40S ribosomal protein S0 OS=Pichia stipitis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.521e-61
Identity = 114/203 (56.16%), Postives = 145/203 (71.43%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYR 620
            LP        D +++LAA VHLG+KN     + YV+K R DG+ +IN+GKTWEK+ +AAR+I A+ NP D+ V S+R +GQRAVLKFA +T A  IAGR TPG FTN +  SF EPRL+++TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WL+AR VL++RG I     +W VM DL+FYR
Sbjct:    3 LPASFDLTPEDAKLLLAANVHLGSKNVQVHNKPYVYKTRPDGVNVINIGKTWEKIVLAARIIAAVPNPSDVAVCSSRTFGQRAVLKFAAHTGATPIAGRFTPGNFTNYITRSFKEPRLVVVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLIAREVLRLRGIIPDRTTEWSVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_THEPA (40S ribosomal protein SA OS=Theileria parva GN=TP04_0748 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.822e-61
Identity = 109/199 (54.77%), Postives = 146/199 (73.37%), Query Frame = 3
Query:   24 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            +L+  E  I+MML A+VH+GTKN + +M +YV+ R  +G+++INL  T EKL++AAR IV + NP +++V SARPYG RAVLKF+ Y  +H IAGR  PGT TNQ+   F EPRLL+ TDPRTD Q ++E++  ++P IA CDTDSP+ YVDI IP NNKGK SI  ++WLLAR VL +R  ++    WDV+VD FF+R
Sbjct:    7 KLTPDEDSIRMMLTAKVHIGTKNVENKMRKYVYSRTQEGVHLINLAHTLEKLKVAARAIVTVSNPEEVVVVSARPYGSRAVLKFSHYVGSHPIAGRWIPGTLTNQITQKFIEPRLLVATDPRTDAQSLRESSYVSLPVIALCDTDSPLNYVDIAIPCNNKGKESIALMYWLLAREVLYLRDQLKRWMPWDVLVDTFFWR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_MONBE (40S ribosomal protein SA OS=Monosiga brevicollis GN=30792 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.822e-61
Identity = 108/199 (54.27%), Postives = 148/199 (74.37%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTH-AHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            L   EADIQ +L A+VHLG  NC   M +YV+KRR+DG+ +I+L KT+EK+ +AAR+I A+++P ++   S R +GQRA+LKF  +   A  IAGR TPG FTNQ+Q +F EPRLL+LTDP  DHQ ++EA+  NIP I+ CD D+P+RYVD+ IP NNK  H+IG ++W+LAR VL++RGT+    +WDVM DL+F+R
Sbjct:    8 LKPTEADIQKLLMAKVHLGASNCTTAMSKYVYKRRSDGVNVIDLNKTYEKIVLAARIIAAVDSPANVCAISGRNFGQRAILKFCNHIGGAFPIAGRFTPGAFTNQIQKAFQEPRLLVLTDPLVDHQAVREASYVNIPIISLCDVDAPLRYVDVVIPCNNKSPHAIGIVWWMLAREVLRLRGTLPRDAEWDVMPDLYFFR 206          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_CRYHO (40S ribosomal protein SA OS=Cryptosporidium hominis GN=Chro.30246 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.675e-60
Identity = 111/202 (54.95%), Postives = 147/202 (72.77%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            +P   ++K  DI  M+  + H+GTKN + +M  YV+KR ++GI++INL KTWEK+Q+AAR+I  I+N  D++V S RPYG R  LKFA++T AHA+ GR TPGT TNQ+   F EPRLLI+TDPR D Q + E++  NIP IA CDTDSP++YVD+ IP NNKGK SI  +++LLAR V  +RG      KWDVMVD+FF+R
Sbjct:    1 MPPAETRKLDDIAKMIVCKTHIGTKNVEDKMLSYVYKRTHEGIFLINLAKTWEKIQIAARIIATIDNLADVVVVSQRPYGSRPALKFAQHTGAHAMVGRFTPGTLTNQITQKFMEPRLLIVTDPRVDSQAVIESSYANIPVIALCDTDSPLQYVDVAIPCNNKGKESIALMYYLLAREVNFLRGKT---DKWDVMVDVFFWR 199          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_CANGA (40S ribosomal protein S0 OS=Candida glabrata GN=RPS0 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.675e-60
Identity = 114/203 (56.16%), Postives = 143/203 (70.44%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYR 620
            LP        D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG +      W +M DL+FYR
Sbjct:    3 LPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALTDRTQPWSIMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_CANAW (40S ribosomal protein S0 OS=Candida albicans (strain WO-1) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.675e-60
Identity = 116/203 (57.14%), Postives = 144/203 (70.94%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYR 620
            LP        D +++LAA VHLG KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I A+ N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+++TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL++RG I     +W VM DL+FYR
Sbjct:    3 LPASFDLTPEDAKLLLAANVHLGAKNVQVHNKPYVYKTRPDGMNIINIGKTWEKIVLAARIIAAVPNASDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVVVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRLRGIIPDRTTEWSVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_CANAL (40S ribosomal protein S0 OS=Candida albicans GN=RPS0 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.675e-60
Identity = 116/203 (57.14%), Postives = 144/203 (70.94%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYR 620
            LP        D +++LAA VHLG KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I A+ N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+++TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL++RG I     +W VM DL+FYR
Sbjct:    3 LPASFDLTPEDAKLLLAANVHLGAKNVQVHNKPYVYKTRPDGMNIINIGKTWEKIVLAARIIAAVPNASDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVVVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRLRGIIPDRTTEWSVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_CANDC (40S ribosomal protein S0 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.188e-60
Identity = 116/203 (57.14%), Postives = 144/203 (70.94%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYR 620
            LP        D +++LAA VHLG KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I A+ N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WL+AR VL++RG I     +W VM DL+FYR
Sbjct:    3 LPASFDLTPEDAKLLLAANVHLGAKNVQVHNKPYVYKTRPDGMNIINIGKTWEKIVLAARIIAAVPNASDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLIAREVLRLRGIIPDRTTEWSVMPDLYFYR 205          
The following BLAST results are available for this feature:
BLAST of CF832355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_THEAN4.409e-6155.2840S ribosomal protein SA OS=Theileria annulata GN=... [more]
RSSA_LODEL4.409e-6157.6440S ribosomal protein S0 OS=Lodderomyces elongispo... [more]
RSSA_PICST7.521e-6156.1640S ribosomal protein S0 OS=Pichia stipitis GN=RPS... [more]
RSSA_THEPA9.822e-6154.7740S ribosomal protein SA OS=Theileria parva GN=TP0... [more]
RSSA_MONBE9.822e-6154.2740S ribosomal protein SA OS=Monosiga brevicollis G... [more]
RSSA_CRYHO1.675e-6054.9540S ribosomal protein SA OS=Cryptosporidium homini... [more]
RSSA_CANGA1.675e-6056.1640S ribosomal protein S0 OS=Candida glabrata GN=RP... [more]
RSSA_CANAW1.675e-6057.1440S ribosomal protein S0 OS=Candida albicans (stra... [more]
RSSA_CANAL1.675e-6057.1440S ribosomal protein S0 OS=Candida albicans GN=RP... [more]
RSSA_CANDC2.188e-6057.1440S ribosomal protein S0 OS=Candida dubliniensis (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832355 ID=CF832355; Name=CF832355; organism=Citrus sinensis; type=EST; length=743bp
CGGAACAGCAACGGCTCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATT
CAGATGATGTTAGCCGCCGAAGTACATTTGGGTACTAAGAACTGTGACTT
CCAAATGGAACGTTACGTGTTCAAGCGCCGAAACGATGGAATTTATATTA
TCAATCTTGGCAAGACTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATC
GTAGCCATTGAAAACCCTGGGGACATTATTGTCCAATCAGCTAGACCCTA
TGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTACACTCACGCCCATGCCA
TTGCTGGCAGGCACACTCCTGGTACATTTACCAATCAAATGCAAACATCA
TTCAATGAGCCCCGACTTCTCATTCTAACAGATCCACGAACAGACCATCA
GCCAATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATTGCCTTTTGTG
ACACTGACTCACCTATGCGTTATGTTGATATTGGCATTCCTGCCAATAAC
AAGGGCAAACACAGCATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGT
TCTCCAGATGCGCGGCACTATTCGTCCTGGCCACAAGTGGGATGTGATGG
TCGATCTGTTCTTCTACAGGGAGCCAGAAGAAACCAAGCAGGCTGAAGAA
GAAGAAACTGCTGCTATTGATTATGCTACAGCAGAGTACAGCATGAATCT
TACCAGTGGTGAGCAATGGCCTTCCCAAATTGCTGATGGTGGG
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