CF832355
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_SCHJA (40S ribosomal protein SA OS=Schistosoma japonicum GN=SJCHGC06078 PE=2 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 2.343e-54 Identity = 102/192 (53.12%), Postives = 132/192 (68.75%), Query Frame = 3 Query: 45 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620 D+++MLAA VH+G N +FQM YV R D +II L KTWEK+ ++AR I AI+ D+ +RP+ QRAVLKFA YT A A+AGR TPG FTNQ Q+ F EPRLL+++DP +DHQ + EA+ N+P IA C+TDSP+ VDI IP NNK HSI ++W LAR V ++RG +W V+ DLF YR Sbjct: 14 DLRLMLAAHVHVGETNMNFQMSTYVHGRTKDNFHIIKLDKTWEKILLSARAIAAIDTASDVFAIGSRPFSQRAVLKFANYTGATAMAGRFTPGAFTNQKQSCFREPRLLVVSDPLSDHQAVMEASSVNVPLIALCNTDSPLTRVDIVIPCNNKSTHSIAVVWWFLAREVRRIRGEDTRLQQWSVLPDLFLYR 205
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_GIALA (40S ribosomal protein SA OS=Giardia lamblia GN=GL50803_7766 PE=3 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.519e-53 Identity = 96/197 (48.73%), Postives = 137/197 (69.54%), Query Frame = 3 Query: 21 RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 611 ++ KEAD++ ML A HLG +N D +M+ Y+F R+ DG ++ NL K W K+ AAR++V I++P +I V + RP QRA+LKF KYTHA A GR PG FTN+M ++ EPRLL++ DP D Q I EA+ NIPTI+ C++D+ ++++D+ IP NNK SIG ++WLLAR VL+++G+I +WDV DLF Sbjct: 11 KEYQLKEADVKKMLVATTHLGVRNIDRRMQFYIFDRQKDGTFVFNLQKVWAKIVFAARILVTIDDPAEIAVVANRPDAQRAILKFCKYTHATAFPGRFIPGNFTNRMNPNYCEPRLLLVNDPVVDRQAILEASYVNIPTISLCNSDANLKFIDVAIPCNNKTPMSIGLIYWLLAREVLRLKGSISRTEEWDVKPDLF 207
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_STRPU (40S ribosomal protein SA (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 8.354e-44 Identity = 79/128 (61.72%), Postives = 104/128 (81.25%), Query Frame = 3 Query: 237 SARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620 S+RPYGQRAVLKF +T A +AGR+TPGTFTNQ+Q +F EPR+LI+TDPR+DHQP+ EA+ NIP IA C++DSP+R+VDI IP NNK HSIG ++W+L+R VL++RG I W++MVDL+F+R Sbjct: 1 SSRPYGQRAVLKFGAHTGATPVAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIALCNSDSPLRHVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIMVDLYFFR 128
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_SULSO (30S ribosomal protein S2P OS=Sulfolobus solfataricus GN=rps2p PE=3 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 2.515e-40 Identity = 89/212 (41.98%), Postives = 137/212 (64.62%), Query Frame = 3 Query: 3 EQQRLPRQLSQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620 E ++ + S+K A I+++ L+A VH+GT +C ME +V++ R +G+Y++++ K E+L++AA+ + + P DIIV ++RPY R V KFA+ + A+ GR PGTFTN +++ EP++L+++DPRTD Q IKEAA IP +AF DTD+ + Y+D+ IPANNKG+ S+ L+W LAR +L+ R I P V V F R Sbjct: 18 EAEKEELRKSEKGAIIELLVPVDTYLSAGVHIGTHSCTKYMESFVYRVRAEGLYVLDVRKIDERLRIAAKFLSRYD-PQDIIVVASRPYAYRPVQKFAEVVGSRALVGRIIPGTFTNPYLSTYIEPKVLLVSDPRTDTQAIKEAAKVGIPIVAFADTDAKIDYIDLIIPANNKGRKSLALLYWALARQILRERRVIPPDGDLAVPVSEFEMR 228
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_METS3 (30S ribosomal protein S2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps2p PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.318e-40 Identity = 77/182 (42.31%), Postives = 121/182 (66.48%), Query Frame = 3 Query: 27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 572 +S+ ++ LAA +H+GT+ ME+Y+F+ R+DG+Y++++ KT E+++ A+++ + P DI+V + R YGQ V KF + T A I GR PGT TN F EP+++++TDPR+D Q + E+ IP IA CDT++ + +VDI IP NNKG+ +I ++WLLAR +L+ RGTI Sbjct: 1 MSELLIELDNYLAAGLHIGTQQKTSDMEKYIFRVRSDGLYVLDIQKTDERIRQIAKLLARYD-PEDILVVATRQYGQAPVKKFGEVTGAKTIPGRFIPGTLTNPTYAKFIEPKIIVVTDPRSDAQAVLESKQNGIPVIALCDTENLLSFVDIAIPVNNKGRKAIALVYWLLARQILRERGTI 181
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_PYRHO (30S ribosomal protein S2P OS=Pyrococcus horikoshii GN=rps2p PE=3 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 3.075e-38 Identity = 77/188 (40.96%), Postives = 120/188 (63.83%), Query Frame = 3 Query: 48 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 611 + LAA VH+GT+ M++++++ R DG+Y++++ KT E+L++A + + E P I+ S R YGQ+ V KF + T A AI GR PGT TN +F EP ++I+TDPR DHQ +KEA IP +A DT++ + YVD+ IP NNKG+ ++ ++W+LAR +L RG I ++ + V+ F Sbjct: 9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPEVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEISSREEFKIPVEEF 195
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_STAMF (30S ribosomal protein S2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps2p PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38 Identity = 78/177 (44.07%), Postives = 113/177 (63.84%), Query Frame = 3 Query: 48 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 578 ++ LAA VH+GT C ME +V++ RNDG+YI+++ K E++++AA+ + E P I S R YGQ+ V+KF Y GR PGTFTN + EP +++LTDPR D Q +KEAA IP ++ DTD+ Y+D+ IPANNKG+ S+ ++WLLAR +L+ RG + P Sbjct: 28 LEKYLAAGVHIGTHICTKFMEPFVYRVRNDGLYILDVRKIDERIRIAAKFLSRYE-PSKIAAVSVRTYGQKPVVKFCNYVGCKPFTGRFMPGTFTNPSLKWYFEPDIVLLTDPRADSQALKEAAEIGIPIVSLADTDNRTEYIDLIIPANNKGRKSLALIYWLLARQILRERGLLPP 203
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_PYRFU (30S ribosomal protein S2P OS=Pyrococcus furiosus GN=rps2p PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38 Identity = 77/188 (40.96%), Postives = 120/188 (63.83%), Query Frame = 3 Query: 48 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 611 + LAA VH+GT+ M++++++ R DG+Y++++ KT E+L++A + + E P I+ S R YGQ+ V KF + T A AI GR PGT TN +F EP +LI+TDPR DHQ ++EA IP +A DT++ + YVD+ IP NNKG+ ++ ++W+LAR +L RG I+ + + V+ F Sbjct: 9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEIQSREDFKIPVEEF 195
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_METS5 (30S ribosomal protein S2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps2p PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38 Identity = 84/209 (40.19%), Postives = 129/209 (61.72%), Query Frame = 3 Query: 3 EQQRLPRQLSQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 611 E+++ Q +K A I+++ L+A VH+GT C MER++++ R +G+Y++++ K E+L++AA+ + + P I+ ++RPY V KFA+ A A+ GR PG TN F EP +L+++DPRTD Q IKEAA IP +AF DTD+ + YVD+ IP+NNKG+ S+ L+W LAR +L+ R I P V V+ F Sbjct: 12 EEEKEELQRGEKGAIIELLVPLENYLSAGVHIGTHTCTRYMERFIYRVRPEGLYVLDVRKIDERLRVAAKFLSRFQ-PQSILAVASRPYAFTPVQKFAEVVGARAVVGRMVPGMLTNPYLEDFIEPEVLLVSDPRTDTQAIKEAADMGIPVVAFSDTDAKVDYVDLVIPSNNKGRKSLALLYWALARQILRERKEIAPDADIPVKVEEF 219
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_PYRAB (30S ribosomal protein S2P OS=Pyrococcus abyssi GN=rps2p PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.168e-37 Identity = 76/188 (40.43%), Postives = 120/188 (63.83%), Query Frame = 3 Query: 48 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 611 + LAA VH+GT+ M++++++ R DG+Y++++ KT E+L++A + + + P I+ S R YGQ+ V KF + T A AI GR PGT TN +F EP ++I+TDPR DHQ +KEA IP +A DT++ + YVD+ IP NNKG+ ++ ++W+LAR +L RG I ++ + V+ F Sbjct: 9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFD-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEISSREEFKIPVEEF 195 The following BLAST results are available for this feature:
BLAST of CF832355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832355 ID=CF832355; Name=CF832355; organism=Citrus sinensis; type=EST; length=743bpback to top |