CF832355

Overview
NameCF832355
Unique NameCF832355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_SCHJA (40S ribosomal protein SA OS=Schistosoma japonicum GN=SJCHGC06078 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.343e-54
Identity = 102/192 (53.12%), Postives = 132/192 (68.75%), Query Frame = 3
Query:   45 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            D+++MLAA VH+G  N +FQM  YV  R  D  +II L KTWEK+ ++AR I AI+   D+    +RP+ QRAVLKFA YT A A+AGR TPG FTNQ Q+ F EPRLL+++DP +DHQ + EA+  N+P IA C+TDSP+  VDI IP NNK  HSI  ++W LAR V ++RG      +W V+ DLF YR
Sbjct:   14 DLRLMLAAHVHVGETNMNFQMSTYVHGRTKDNFHIIKLDKTWEKILLSARAIAAIDTASDVFAIGSRPFSQRAVLKFANYTGATAMAGRFTPGAFTNQKQSCFREPRLLVVSDPLSDHQAVMEASSVNVPLIALCNTDSPLTRVDIVIPCNNKSTHSIAVVWWFLAREVRRIRGEDTRLQQWSVLPDLFLYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_GIALA (40S ribosomal protein SA OS=Giardia lamblia GN=GL50803_7766 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.519e-53
Identity = 96/197 (48.73%), Postives = 137/197 (69.54%), Query Frame = 3
Query:   21 RQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 611
            ++   KEAD++ ML A  HLG +N D +M+ Y+F R+ DG ++ NL K W K+  AAR++V I++P +I V + RP  QRA+LKF KYTHA A  GR  PG FTN+M  ++ EPRLL++ DP  D Q I EA+  NIPTI+ C++D+ ++++D+ IP NNK   SIG ++WLLAR VL+++G+I    +WDV  DLF
Sbjct:   11 KEYQLKEADVKKMLVATTHLGVRNIDRRMQFYIFDRQKDGTFVFNLQKVWAKIVFAARILVTIDDPAEIAVVANRPDAQRAILKFCKYTHATAFPGRFIPGNFTNRMNPNYCEPRLLLVNDPVVDRQAILEASYVNIPTISLCNSDANLKFIDVAIPCNNKTPMSIGLIYWLLAREVLRLKGSISRTEEWDVKPDLF 207          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_STRPU (40S ribosomal protein SA (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.354e-44
Identity = 79/128 (61.72%), Postives = 104/128 (81.25%), Query Frame = 3
Query:  237 SARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            S+RPYGQRAVLKF  +T A  +AGR+TPGTFTNQ+Q +F EPR+LI+TDPR+DHQP+ EA+  NIP IA C++DSP+R+VDI IP NNK  HSIG ++W+L+R VL++RG I     W++MVDL+F+R
Sbjct:    1 SSRPYGQRAVLKFGAHTGATPVAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIALCNSDSPLRHVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIMVDLYFFR 128          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_SULSO (30S ribosomal protein S2P OS=Sulfolobus solfataricus GN=rps2p PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.515e-40
Identity = 89/212 (41.98%), Postives = 137/212 (64.62%), Query Frame = 3
Query:    3 EQQRLPRQLSQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            E ++   + S+K A I+++      L+A VH+GT +C   ME +V++ R +G+Y++++ K  E+L++AA+ +   + P DIIV ++RPY  R V KFA+   + A+ GR  PGTFTN   +++ EP++L+++DPRTD Q IKEAA   IP +AF DTD+ + Y+D+ IPANNKG+ S+  L+W LAR +L+ R  I P     V V  F  R
Sbjct:   18 EAEKEELRKSEKGAIIELLVPVDTYLSAGVHIGTHSCTKYMESFVYRVRAEGLYVLDVRKIDERLRIAAKFLSRYD-PQDIIVVASRPYAYRPVQKFAEVVGSRALVGRIIPGTFTNPYLSTYIEPKVLLVSDPRTDTQAIKEAAKVGIPIVAFADTDAKIDYIDLIIPANNKGRKSLALLYWALARQILRERRVIPPDGDLAVPVSEFEMR 228          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_METS3 (30S ribosomal protein S2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps2p PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.318e-40
Identity = 77/182 (42.31%), Postives = 121/182 (66.48%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 572
            +S+   ++   LAA +H+GT+     ME+Y+F+ R+DG+Y++++ KT E+++  A+++   + P DI+V + R YGQ  V KF + T A  I GR  PGT TN     F EP+++++TDPR+D Q + E+    IP IA CDT++ + +VDI IP NNKG+ +I  ++WLLAR +L+ RGTI
Sbjct:    1 MSELLIELDNYLAAGLHIGTQQKTSDMEKYIFRVRSDGLYVLDIQKTDERIRQIAKLLARYD-PEDILVVATRQYGQAPVKKFGEVTGAKTIPGRFIPGTLTNPTYAKFIEPKIIVVTDPRSDAQAVLESKQNGIPVIALCDTENLLSFVDIAIPVNNKGRKAIALVYWLLARQILRERGTI 181          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_PYRHO (30S ribosomal protein S2P OS=Pyrococcus horikoshii GN=rps2p PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.075e-38
Identity = 77/188 (40.96%), Postives = 120/188 (63.83%), Query Frame = 3
Query:   48 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 611
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   E P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP ++I+TDPR DHQ +KEA    IP +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I    ++ + V+ F
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPEVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEISSREEFKIPVEEF 195          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_STAMF (30S ribosomal protein S2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38
Identity = 78/177 (44.07%), Postives = 113/177 (63.84%), Query Frame = 3
Query:   48 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 578
            ++  LAA VH+GT  C   ME +V++ RNDG+YI+++ K  E++++AA+ +   E P  I   S R YGQ+ V+KF  Y       GR  PGTFTN     + EP +++LTDPR D Q +KEAA   IP ++  DTD+   Y+D+ IPANNKG+ S+  ++WLLAR +L+ RG + P
Sbjct:   28 LEKYLAAGVHIGTHICTKFMEPFVYRVRNDGLYILDVRKIDERIRIAAKFLSRYE-PSKIAAVSVRTYGQKPVVKFCNYVGCKPFTGRFMPGTFTNPSLKWYFEPDIVLLTDPRADSQALKEAAEIGIPIVSLADTDNRTEYIDLIIPANNKGRKSLALIYWLLARQILRERGLLPP 203          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_PYRFU (30S ribosomal protein S2P OS=Pyrococcus furiosus GN=rps2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38
Identity = 77/188 (40.96%), Postives = 120/188 (63.83%), Query Frame = 3
Query:   48 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 611
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   E P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP +LI+TDPR DHQ ++EA    IP +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I+    + + V+ F
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFE-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEIQSREDFKIPVEEF 195          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_METS5 (30S ribosomal protein S2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.850e-38
Identity = 84/209 (40.19%), Postives = 129/209 (61.72%), Query Frame = 3
Query:    3 EQQRLPRQLSQKEADIQMM------LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 611
            E+++   Q  +K A I+++      L+A VH+GT  C   MER++++ R +G+Y++++ K  E+L++AA+ +   + P  I+  ++RPY    V KFA+   A A+ GR  PG  TN     F EP +L+++DPRTD Q IKEAA   IP +AF DTD+ + YVD+ IP+NNKG+ S+  L+W LAR +L+ R  I P     V V+ F
Sbjct:   12 EEEKEELQRGEKGAIIELLVPLENYLSAGVHIGTHTCTRYMERFIYRVRPEGLYVLDVRKIDERLRVAAKFLSRFQ-PQSILAVASRPYAFTPVQKFAEVVGARAVVGRMVPGMLTNPYLEDFIEPEVLLVSDPRTDTQAIKEAADMGIPVVAFSDTDAKVDYVDLVIPSNNKGRKSLALLYWALARQILRERKEIAPDADIPVKVEEF 219          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RS2_PYRAB (30S ribosomal protein S2P OS=Pyrococcus abyssi GN=rps2p PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.168e-37
Identity = 76/188 (40.43%), Postives = 120/188 (63.83%), Query Frame = 3
Query:   48 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 611
            +   LAA VH+GT+     M++++++ R DG+Y++++ KT E+L++A + +   + P  I+  S R YGQ+ V KF + T A AI GR  PGT TN    +F EP ++I+TDPR DHQ +KEA    IP +A  DT++ + YVD+ IP NNKG+ ++  ++W+LAR +L  RG I    ++ + V+ F
Sbjct:    9 LDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFD-PQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVIIITDPRADHQAMKEAIEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGEISSREEFKIPVEEF 195          
The following BLAST results are available for this feature:
BLAST of CF832355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_SCHJA2.343e-5453.1340S ribosomal protein SA OS=Schistosoma japonicum ... [more]
RSSA_GIALA1.519e-5348.7340S ribosomal protein SA OS=Giardia lamblia GN=GL5... [more]
RSSA_STRPU8.354e-4461.7240S ribosomal protein SA (Fragment) OS=Strongyloce... [more]
RS2_SULSO2.515e-4041.9830S ribosomal protein S2P OS=Sulfolobus solfataric... [more]
RS2_METS37.318e-4042.3130S ribosomal protein S2P OS=Methanobrevibacter sm... [more]
RS2_PYRHO3.075e-3840.9630S ribosomal protein S2P OS=Pyrococcus horikoshii... [more]
RS2_STAMF6.850e-3844.0730S ribosomal protein S2P OS=Staphylothermus marin... [more]
RS2_PYRFU6.850e-3840.9630S ribosomal protein S2P OS=Pyrococcus furiosus G... [more]
RS2_METS56.850e-3840.1930S ribosomal protein S2P OS=Metallosphaera sedula... [more]
RS2_PYRAB1.168e-3740.4330S ribosomal protein S2P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832355 ID=CF832355; Name=CF832355; organism=Citrus sinensis; type=EST; length=743bp
CGGAACAGCAACGGCTCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATT
CAGATGATGTTAGCCGCCGAAGTACATTTGGGTACTAAGAACTGTGACTT
CCAAATGGAACGTTACGTGTTCAAGCGCCGAAACGATGGAATTTATATTA
TCAATCTTGGCAAGACTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATC
GTAGCCATTGAAAACCCTGGGGACATTATTGTCCAATCAGCTAGACCCTA
TGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTACACTCACGCCCATGCCA
TTGCTGGCAGGCACACTCCTGGTACATTTACCAATCAAATGCAAACATCA
TTCAATGAGCCCCGACTTCTCATTCTAACAGATCCACGAACAGACCATCA
GCCAATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATTGCCTTTTGTG
ACACTGACTCACCTATGCGTTATGTTGATATTGGCATTCCTGCCAATAAC
AAGGGCAAACACAGCATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGT
TCTCCAGATGCGCGGCACTATTCGTCCTGGCCACAAGTGGGATGTGATGG
TCGATCTGTTCTTCTACAGGGAGCCAGAAGAAACCAAGCAGGCTGAAGAA
GAAGAAACTGCTGCTATTGATTATGCTACAGCAGAGTACAGCATGAATCT
TACCAGTGGTGAGCAATGGCCTTCCCAAATTGCTGATGGTGGG
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