CF832355

Overview
NameCF832355
Unique NameCF832355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832355_ssr645 microsatellite CF832355_ssr645:645..656. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig423 contig Csv1_Contig423:88..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_BOVIN (40S ribosomal protein SA OS=Bos taurus GN=RPSA PE=2 SV=4)

HSP 1 Score: 272.322 bits (695), Expect = 1.908e-72
Identity = 130/198 (65.66%), Postives = 156/198 (78.79%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_POSPM (40S ribosomal protein S0 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.492e-72
Identity = 129/204 (63.24%), Postives = 163/204 (79.90%), Query Frame = 3
Query:   12 RLPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 620
            +LP  LS  + +IQ++LAA+ H+G+KNCD QM  YV+KRR DGI+I+N+GKTWEKL  AAR+I AIENP D+ V SARPYG RAVLK+A  T A AIAGR TPG+FTN +  SF EPRL+++TDPR DHQ I+EA+  NIP IAFCDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMVD+FFYR
Sbjct:    4 KLPSVLSATDEEIQLLLAAQAHIGSKNCDKQMLPYVWKRRADGIHILNIGKTWEKLVFAARIIAAIENPNDVCVISARPYGHRAVLKYAANTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRVDHQAIREASYVNIPVIAFCDTDAPLKFVDVAIPTNNKSRHSIGLMWWLLAREVLRLRGTIPRTTDGWNVMVDMFFYR 207          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_DROWI (40S ribosomal protein SA OS=Drosophila willistoni GN=sta PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.492e-72
Identity = 133/198 (67.17%), Postives = 156/198 (78.79%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRLRGTISRSIEWPVVVDLFFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_SOLSE (40S ribosomal protein SA OS=Solea senegalensis GN=rpsa PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.251e-72
Identity = 130/198 (65.66%), Postives = 153/198 (77.27%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            L  KE D+   LAA  HLG  N DFQM+ YV+KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H WDVM DL+FYR
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMDHYVYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLLVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWDVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_SPAAU (40S ribosomal protein SA OS=Sparus aurata GN=rpsa PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.552e-72
Identity = 130/198 (65.66%), Postives = 154/198 (77.78%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            L  KE D+   LAA  HLG  N DFQM++YV+KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLLI+TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMDQYVYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_CRIGR (40S ribosomal protein SA OS=Cricetulus griseus GN=Rpsa PE=1 SV=3)

HSP 1 Score: 270.011 bits (689), Expect = 9.470e-72
Identity = 129/198 (65.15%), Postives = 155/198 (78.28%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR V +MRGTI   H W+VM DL+FYR
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_SALSA (40S ribosomal protein SA OS=Salmo salar GN=rpsa PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.110e-71
Identity = 129/198 (65.15%), Postives = 152/198 (76.77%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            L  KE D+   LAA  HLG  N DFQME Y +KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLLI+TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+L+R VL+MRGTI   H W+VM DL+FYR
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNMDFQMEHYTYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIAMCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLSREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_CRYNE (40S ribosomal protein S0 OS=Cryptococcus neoformans GN=RPS0 PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.755e-71
Identity = 129/207 (62.32%), Postives = 160/207 (77.29%), Query Frame = 3
Query:   12 RLPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG----HKWDVMVDLFFYR 620
            +LP+ L   E DIQ++LAA+ HLGTKNCD  ME YV+KRR DGI++IN+GKTWEKL +AARV+  IENP D+ V SARPYG RAVLK+  +T A AIAGR TPG+FTN +  SF EPR++I+TDPR DHQ I+EAA  NIP IAFCDTD+  ++VDI IPANNK +HSIG +++LL R VL++RGT+  G      WDV+ DLFFYR
Sbjct:    5 KLPKALQATEDDIQLLLAAQCHLGTKNCDKSMENYVWKRRADGIHVINVGKTWEKLVLAARVLATIENPNDVCVISARPYGHRAVLKYGSFTGAQAIAGRFTPGSFTNYITRSFKEPRVIIVTDPRVDHQAIREAAYVNIPVIAFCDTDASTKFVDIAIPANNKSRHSIGLMWYLLCREVLRLRGTVPRGPTGPSGWDVLPDLFFYR 211          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_URECA (40S ribosomal protein SA OS=Urechis caupo PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.047e-70
Identity = 130/198 (65.66%), Postives = 153/198 (77.27%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            L+ KE D+   LA   HLG  N DFQME+YV+KRR DG  IIN+ KTWEK+ +AAR I AIENP DI V SARPYGQRAVLKFA YT A  IAGR TPGTFTNQ+QT+F EPRLL++TDP TDHQP+ EA+  NIP IA  +TDSP++YVDI IP NNK  HS+G ++W+LAR VL++RGTI     W+VMVDLFFYR
Sbjct:    8 LALKEEDVTKFLACASHLGANNVDFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAAIENPADICVISARPYGQRAVLKFAHYTGATPIAGRFTPGTFTNQIQTAFREPRLLVVTDPYTDHQPVTEASYVNIPVIALTNTDSPLKYVDIAIPCNNKSIHSVGLMWWMLAREVLRLRGTISREVPWEVMVDLFFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_TRIGR (40S ribosomal protein SA OS=Tripneustes gratilla PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.332e-70
Identity = 123/198 (62.12%), Postives = 157/198 (79.29%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            L+ KE D+Q  LA+  H+G+ N D+QM +YV+KR+ DG YIINL +TWEKL MAAR+IVAIENP D+ V S+RPYGQRAVLKF  +T A  IAGR+TPGTFTNQ+Q +F EPR+LI+TDPR+DHQP+ EA+  NIP IA C+TDSP+RYVDI IP NNK  HSIG ++W+L+R VL++RG I     W++M DL+F+R
Sbjct:    8 LALKEDDVQKFLASGAHIGSSNLDYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVAIENPADVCVISSRPYGQRAVLKFGAHTGATPIAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIALCNTDSPLRYVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIMCDLYFFR 205          
The following BLAST results are available for this feature:
BLAST of CF832355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_BOVIN1.908e-7265.6640S ribosomal protein SA OS=Bos taurus GN=RPSA PE=... [more]
RSSA_POSPM2.492e-7263.2440S ribosomal protein S0 OS=Postia placenta (strai... [more]
RSSA_DROWI2.492e-7267.1740S ribosomal protein SA OS=Drosophila willistoni ... [more]
RSSA_SOLSE4.251e-7265.6640S ribosomal protein SA OS=Solea senegalensis GN=... [more]
RSSA_SPAAU5.552e-7265.6640S ribosomal protein SA OS=Sparus aurata GN=rpsa ... [more]
RSSA_CRIGR9.470e-7265.1540S ribosomal protein SA OS=Cricetulus griseus GN=... [more]
RSSA_SALSA2.110e-7165.1540S ribosomal protein SA OS=Salmo salar GN=rpsa PE... [more]
RSSA_CRYNE2.755e-7162.3240S ribosomal protein S0 OS=Cryptococcus neoforman... [more]
RSSA_URECA1.047e-7065.6640S ribosomal protein SA OS=Urechis caupo PE=2 SV=... [more]
RSSA_TRIGR2.332e-7062.1240S ribosomal protein SA OS=Tripneustes gratilla P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832355 ID=CF832355; Name=CF832355; organism=Citrus sinensis; type=EST; length=743bp
CGGAACAGCAACGGCTCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATT
CAGATGATGTTAGCCGCCGAAGTACATTTGGGTACTAAGAACTGTGACTT
CCAAATGGAACGTTACGTGTTCAAGCGCCGAAACGATGGAATTTATATTA
TCAATCTTGGCAAGACTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATC
GTAGCCATTGAAAACCCTGGGGACATTATTGTCCAATCAGCTAGACCCTA
TGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTACACTCACGCCCATGCCA
TTGCTGGCAGGCACACTCCTGGTACATTTACCAATCAAATGCAAACATCA
TTCAATGAGCCCCGACTTCTCATTCTAACAGATCCACGAACAGACCATCA
GCCAATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATTGCCTTTTGTG
ACACTGACTCACCTATGCGTTATGTTGATATTGGCATTCCTGCCAATAAC
AAGGGCAAACACAGCATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGT
TCTCCAGATGCGCGGCACTATTCGTCCTGGCCACAAGTGGGATGTGATGG
TCGATCTGTTCTTCTACAGGGAGCCAGAAGAAACCAAGCAGGCTGAAGAA
GAAGAAACTGCTGCTATTGATTATGCTACAGCAGAGTACAGCATGAATCT
TACCAGTGGTGAGCAATGGCCTTCCCAAATTGCTGATGGTGGG
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