CF832365

Overview
NameCF832365
Unique NameCF832365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1010 contig Csv1_Contig1010:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832365 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.644e-20
Identity = 67/205 (32.68%), Postives = 107/205 (52.20%), Query Frame = 2
Query:   77 VDADGTGDFTTITDAINFAPNNSDDRVVINIKQGVYEENLEIPSYKTNIFLLGGGKDSTIITRSRSVGDGWTTFRSATVAVSGDRFLARDLTIENKA----GPEK-YQAVALRVNADFAALFRCSFSGYQDTLYVHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQ-FTVITAQLKDDPNENTGISIQNCSILAT 673
            V  +G G F TIT+AIN     +  RV+I I  GVY+E + I   K  I L G      ++T   +    + T  SAT+ V  D F+A ++ ++N A    G  K  QA+++R++ + AA + C F GYQDT+   +   F+++C + GT D+IFG+     ++  + ++L + G    VITA       E +G S  +C +  T
Sbjct:   45 VKQNGRGHFKTITEAINSVRAGNTRRVIIKIGPGVYKEKVTIDRSKPFITLYGHPNAMPVLTFDGTAAQ-YGTVDSATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSG----RSLYLGTQLNVVGDGIRVITAHAGKSAAEKSGYSFVHCKVTGT 244          
BLAST of CF832365 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 64/209 (30.62%), Postives = 110/209 (52.63%), Query Frame = 2
Query:   65 QVLTVDADGTGDFTTITDAINFAPNNSDDRVVINIKQGVYEENLEIPSYKTNIFLLGGGKDSTIITRSRSVGDGWTTFRSATVAVSGDRFLARDLTIENKA----GPEK-YQAVALRVNADFAALFRCSFSGYQDTLYVHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQ-FTVITAQLKDDPNENTGISIQNCSILAT 673
            +++ V+  G G+F T+TDAI   P  +  RV+I +  G Y+E + I   K  I L+G      +IT   +    + T  SA++ +  D F+A ++ ++N A    G  K  QA+++R++ +FAA + C F G+QDT+   +   F+++C V GT D+IFG+      +  + ++L + G    VI A       E +G S  +C +  T
Sbjct:   65 RIINVNPKG-GEFKTLTDAIKSVPAGNTKRVIIKMAPGEYKEKVTIDRNKPFITLMGQPNAMPVITYDGTAAK-YGTVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGT----SMYLGTQLHVVGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGT 267          
BLAST of CF832365 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 64/209 (30.62%), Postives = 109/209 (52.15%), Query Frame = 2
Query:   65 QVLTVDADGTGDFTTITDAINFAPNNSDDRVVINIKQGVYEENLEIPSYKTNIFLLGGGKDSTIITRSRSVGDGWTTFRSATVAVSGDRFLARDLTIENKA----GPEK-YQAVALRVNADFAALFRCSFSGYQDTLYVHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPLPGQ-FTVITAQLKDDPNENTGISIQNCSILAT 673
            +++ V+  G G+F T+TDAI   P  +  RV+I +  G Y E + I   K  I L+G      +IT   +    + T  SA++ +  D F+A ++ ++N A    G  K  QA+++R++ +FAA + C F G+QDT+   +   F+++C V GT D+IFG+      +  + ++L + G    VI A       E +G S  +C +  T
Sbjct:   65 RIINVNPKG-GEFKTLTDAIKSVPAGNTKRVIIKMAHGEYREKVTIDRNKPFITLMGQPNAMPVITYDGTAAK-YGTVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGT----SMYLGTQLHVVGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGT 267          
BLAST of CF832365 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 60/207 (28.99%), Postives = 96/207 (46.38%), Query Frame = 2
Query:   71 LTVDADGTGDFTTITDAINFAPNNSDDRVVINIKQGVYEENLEIPSYKTNIFLLGGGKDSTIITRSRSVGDGWTTFRSATVAVSGDRFLARDLTIENKAG------PEKYQAVALRVNADFAALFRCSFSGYQDTLYVHSFRQFYRECDVYGTIDYIFGNAAVVLQACNIVSRLPL---PGQFTVITAQLKDDPNENTGISIQNCSI 664
            +TVD +G G+FTT+  AI+     + + + +  + G+Y E + IP  K  I+L G G + T+I       D   T  SAT     D  +   +T +N          E   AVA R+  D   +   SF G QDTL+    R +Y+ C + G ID+IFG    + + C +   L +      +  ITA  +  P++  G    +C++
Sbjct:   35 ITVDLNGGGNFTTVQSAIDSISPPNHNWIRVFTQNGIYREKVTIPKEKGFIYLQGKGIEQTVI----EYDDHQATDISATFTAFADDIVISGITFKNTYNIVPNNKREIVPAVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDCTV 237          
BLAST of CF832365 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 61/224 (27.23%), Postives = 104/224 (46.43%), Query Frame = 2
Query:   77 VDADGTGDFTTITDAINFAPNNSDDRVVINIKQGVYEENLEIPSYKTNIFLLGGGKDSTI-------ITRSRSVGDGWTTFRSATVAVSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYVHSFRQFYRECDVYGTIDYIFG-NAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRP 724
            V A   GD+ TI+ A++     S +   I I++G Y+E + IP+    + + G  +D+T        IT + ++ D      +AT+    +     +L I N  G   +QA+A+   A     + C F+GYQDTL   +  Q Y    + G +D+IFG +A      C+I  R+        ITA  +   ++++   I   ++ A +    +S +   YLGRP
Sbjct:   29 VVAKSGGDYDTISAAVDALSTTSTETQTIFIEEGSYDEQVYIPALSGKLIVYGQTEDTTTYTSNLVNITHAIALADVDNDDETATLRNYAEGSAIYNLNIANTCGQACHQALAVSAYASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDI--RVLEGPSSASITANGRSSESDDSYYVIHKSTVAAADGNDVSSGTY--YLGRP 248          
BLAST of CF832365 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 65/230 (28.26%), Postives = 105/230 (45.65%), Query Frame = 2
Query:   77 VDADGTGDFTTITDAINFAPNNSDDRVVINIKQGVYEENLEIPSYKTNIFLLGGGKDS-----TIITRSRSVG--------DGWTTFRSATVAVSGDRFLARDLTIENKAGPEKYQAVALRVNADFAALFRCSFSGYQDTLYVHSFRQFYRECDVYGTIDYIFG-NAAVVLQACNIVSRLPLPGQFTVITAQLKDDPNENTGISIQNCSILATEDLYANSASVKSYLGRP 724
            V A   GD+TTI DAI+    ++ D   I I++G Y+E + +P+    + + G  +++      ++T + ++         D   TFR+  V          +L I N  G   +QA+AL   AD    + C+F+GYQDTL   +  Q Y    + G +D+IFG +A    Q  N+  R+        ITA  +    + +   I   ++ A E    + A    YLGRP
Sbjct:   29 VVAKSGGDYTTIGDAIDALSTSTTDTQTIFIEEGTYDEQVYLPAMTGKVIIYGQTENTDSYADNLVTITHAISYEDAGESDDLTATFRNKAVGSQ-----VYNLNIANTCGQACHQALALSAWADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQ--NVDIRVVEGPTSASITANGRSSETDTSYYVINKSTVAAKEG--DDVAEGTYYLGRP 249          
BLAST of CF832365 vs. ExPASy Swiss-Prot
Match: PME1_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 61/195 (31.28%), Postives = 81/195 (41.54%), Query Frame = 2
Query:   77 VDADGTGDFTTITDAINFAPNNSD-DRVVINIKQGVYEENLEIPSYKTNIFLLG---------------------GGKDSTIITRSRSVGDGWTTFRSATVAVSGDRFLARDLTIENKAGPEKY-----QAVALRVNADFAALFRCSFSGYQDTLYVHS------FRQFYRECDVYGTIDYIFGNAAVVLQACNI 562
            V ADGT  + T+  AI+ A N     R  I++K G+Y E + +P     I L G                     G K +  +  S +   G  T RSAT  V    F AR+LT +N      Y      AVAL V  D A L   S  G QDTL+V +       R +++   + G  D+IFG    V   C I
Sbjct:   82 VAADGTAQYKTVQAAIDAAVNAGGVARRYISVKAGIYNELVCVPESAPPITLYGLDANAGNTQIVYNNANPTPASGAKTNPCMGTSSNATVG--TLRSATAMVRASDFHARNLTFKNSYVEGTYADNNQSAVALAVRGDKAILENVSVIGNQDTLFVGATSTTTVIRAYFKNSFIQGDTDFIFGAGTAVFHGCTI 274          
The following BLAST results are available for this feature:
BLAST of CF832365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME63_ARATH1.644e-2032.68Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PPME1_ARATH2.804e-2030.62Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME48_ARATH2.804e-2030.62Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PME66_ARATH3.790e-1728.99Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]
PME_ASPTU3.003e-1427.23Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]
PME_ASPAC3.003e-1428.26Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME1_RALSO5.301e-1131.28Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832365 ID=CF832365; Name=CF832365; organism=Citrus sinensis; type=EST; length=732bp
GTTGTCAAGAACAGATCGCCGGATTCTGCAGAGCTCCGATGACGATAATG
AGTATGACCAGAGTCAAGTACTGACTGTGGATGCCGATGGAACAGGAGAT
TTCACTACCATCACTGATGCGATAAATTTTGCTCCCAATAACAGCGATGA
TAGAGTAGTCATCAATATCAAACAAGGGGTTTATGAGGAGAATTTGGAAA
TTCCAAGCTATAAGACCAACATTTTTCTGCTTGGAGGCGGTAAAGATTCA
ACTATCATCACCAGAAGCAGAAGTGTGGGCGATGGCTGGACCACTTTCAG
ATCTGCAACAGTAGCTGTGTCCGGAGACCGGTTTCTGGCACGGGACCTAA
CAATTGAGAACAAGGCAGGGCCAGAGAAGTACCAAGCGGTTGCCTTAAGA
GTGAATGCAGATTTTGCAGCCTTGTTCAGATGCAGCTTCTCTGGTTACCA
AGATACGTTATATGTACACTCATTTCGTCAGTTTTATCGAGAGTGCGACG
TATACGGAACCATAGACTACATATTTGGTAACGCTGCAGTGGTTCTCCAG
GCATGTAACATCGTATCTAGACTGCCATTGCCAGGGCAATTCACAGTCAT
CACAGCACAATTAAAAGACGACCCGAATGAAAACACTGGAATCTCAATCC
AAAATTGTTCAATTTTGGCTACTGAAGATCTGTATGCAAATTCTGCAAGT
GTTAAAAGTTACCTAGGCAGGCCCTTGAGGAT
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