CF832366

Overview
NameCF832366
Unique NameCF832366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = -2 
Query:  171 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPY 317
            LAVL +YKVD  GKV +LR+EC N  CGAG F+ANH  R YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_DICDI (40S ribosomal protein S27a OS=Dictyostelium discoideum GN=ubqC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = -2 
Query:  183 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKC 317
            LAVL++YK D++GK++R+ +ECP   CGAG FMA H +R YCGKC
Sbjct:   25 LAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHANRQYCGKC 69
The following BLAST results are available for this feature:
BLAST of CF832366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RS37_YEAST1.112e-1163.2740S ribosomal protein S31 OS=Saccharomyces cerevis... [more]
RS27A_DICDI3.236e-1160.0040S ribosomal protein S27a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832366 ID=CF832366; Name=CF832366; organism=Citrus sinensis; type=EST; length=645bp
AAAACAGATAACCATTTAATTCCATTGGTCAAGCAAACAAGTATATAGTC
AAACAAAATTACCAGAGAGTCGTAATTTTTGAACCACAAAAACCATAGTA
ATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCGATCAATCA
CCGCCAGCCTTCTGGTAAACATAGGGGAGTCCACACTTGCCGCAGTAGTG
CCTGGAAAAGTGGTTAGCCATGAAGGTGCCGGCTCCACACTCAGCATTCG
GACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGACCTTGTAA
AACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTTTT
CGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACCACGGAGAC
GGAGGACGAGGGGGAGTGTTGACTCCTTTTGGATGTTGAAGTCGGCTAGG
GGTCTGCCGTCCTCGAGCTGCTTTCCGGGGAAAATGAGACGCTGCTGGTC
CGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGACGATGG
TGCCCGATGATTCTACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTTTTC
ACGAAGATCTGCATGGCTGCCGATGAGGAGAGACCCAGCAAATTT
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