CF832366

Overview
NameCF832366
Unique NameCF832366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVK+KIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVK+KIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVK+KIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVK+KIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVK KIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.383e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVE S TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.383e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVE S TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.383e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVE S TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.383e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVE S TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.383e-30
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVE S TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF832366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_SCHPO1.825e-3089.47Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA1.825e-3089.47Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE1.825e-3089.47Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL1.825e-3089.47Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_AGLNE1.825e-3089.47Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA2.383e-3089.47Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR2.383e-3089.47Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_RAT2.383e-3089.47Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT2.383e-3089.47Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY2.383e-3089.47Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832366 ID=CF832366; Name=CF832366; organism=Citrus sinensis; type=EST; length=645bp
AAAACAGATAACCATTTAATTCCATTGGTCAAGCAAACAAGTATATAGTC
AAACAAAATTACCAGAGAGTCGTAATTTTTGAACCACAAAAACCATAGTA
ATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCGATCAATCA
CCGCCAGCCTTCTGGTAAACATAGGGGAGTCCACACTTGCCGCAGTAGTG
CCTGGAAAAGTGGTTAGCCATGAAGGTGCCGGCTCCACACTCAGCATTCG
GACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGACCTTGTAA
AACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTTTT
CGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACCACGGAGAC
GGAGGACGAGGGGGAGTGTTGACTCCTTTTGGATGTTGAAGTCGGCTAGG
GGTCTGCCGTCCTCGAGCTGCTTTCCGGGGAAAATGAGACGCTGCTGGTC
CGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGACGATGG
TGCCCGATGATTCTACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTTTTC
ACGAAGATCTGCATGGCTGCCGATGAGGAGAGACCCAGCAAATTT
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