CF832366
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_ASPOF (40S ribosomal protein S27a OS=Asparagus officinalis PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22 Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = -2 Query: 159 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQK 317 LAVLQFYKVDD+GKV RLRKECPNAECGAGTFMANH RHYCGKCGL YVYQK Sbjct: 24 LAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRHYCGKCGLTYVYQK 76
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_HORVU (40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21 Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = -2 Query: 156 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVY-QKA 317 LAVLQFYKVDD+ GKV RLRKECPNA+CGAGTFMANHF RHYCGKCGL YVY QKA Sbjct: 24 LAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.311e-20 Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = -2 Query: 156 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVY-QKA 317 LAVLQFYKVDD+ GKV RLRKECPN +CGAGTFMANHF RHYCGKCGL YVY QKA Sbjct: 24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.311e-20 Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = -2 Query: 156 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVY-QKA 317 LAVLQFYKVDD+ GKV RLRKECPN ECGAG FMANHF RHYCGKCGL YVY QKA Sbjct: 24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.981e-20 Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = -2 Query: 156 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQKA 317 LAVLQFYKVD SGKVQRL+KECP+ CG GTFMA+HF RHYCGKCG YV++KA Sbjct: 24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 9.394e-19 Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -2 Query: 186 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGK 317 LAVLQFYKVD+SGKVQRLRKECPN ECGAGTFMANHF RHYCGK Sbjct: 24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2 Query: 159 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQK 317 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HF RHYCGKC L Y + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2 Query: 159 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQK 317 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HF RHYCGKC L Y + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2 Query: 159 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQK 317 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HF RHYCGKC L Y + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2 Query: 159 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQK 317 LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HF RHYCGKC L Y + K Sbjct: 24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76 The following BLAST results are available for this feature:
BLAST of CF832366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 122
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832366 ID=CF832366; Name=CF832366; organism=Citrus sinensis; type=EST; length=645bpback to top |