CF832366

Overview
NameCF832366
Unique NameCF832366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_ASPOF (40S ribosomal protein S27a OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = -2
Query:  159 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQK 317
            LAVLQFYKVDD+GKV RLRKECPNAECGAGTFMANH  RHYCGKCGL YVYQK
Sbjct:   24 LAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRHYCGKCGLTYVYQK 76          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_HORVU (40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = -2
Query:  156 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVY-QKA 317
            LAVLQFYKVDD+ GKV RLRKECPNA+CGAGTFMANHF RHYCGKCGL YVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.311e-20
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = -2
Query:  156 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVY-QKA 317
            LAVLQFYKVDD+ GKV RLRKECPN +CGAGTFMANHF RHYCGKCGL YVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.311e-20
Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = -2
Query:  156 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVY-QKA 317
            LAVLQFYKVDD+ GKV RLRKECPN ECGAG FMANHF RHYCGKCGL YVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.981e-20
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = -2
Query:  156 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQKA 317
            LAVLQFYKVD SGKVQRL+KECP+  CG GTFMA+HF RHYCGKCG  YV++KA
Sbjct:   24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.394e-19
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -2
Query:  186 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGK 317
            LAVLQFYKVD+SGKVQRLRKECPN ECGAGTFMANHF RHYCGK
Sbjct:   24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2
Query:  159 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQK 317
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HF RHYCGKC L Y + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2
Query:  159 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQK 317
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HF RHYCGKC L Y + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2
Query:  159 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQK 317
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HF RHYCGKC L Y + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = -2
Query:  159 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQK 317
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HF RHYCGKC L Y + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
The following BLAST results are available for this feature:
BLAST of CF832366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RS27A_ASPOF1.072e-2290.5740S ribosomal protein S27a OS=Asparagus officinali... [more]
RS27A_HORVU2.641e-2187.5040S ribosomal protein S27a OS=Hordeum vulgare GN=M... [more]
RS27A_ORYSJ1.311e-2085.7140S ribosomal protein S27a OS=Oryza sativa subsp. ... [more]
RS27A_MAIZE1.311e-2085.7140S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=... [more]
R27AA_ARATH4.981e-2077.7840S ribosomal protein S27a-1 OS=Arabidopsis thalia... [more]
RS27A_DAUCA9.394e-1993.1840S ribosomal protein S27a (Fragment) OS=Daucus ca... [more]
RS27A_CHICK2.314e-1767.9240S ribosomal protein S27a OS=Gallus gallus GN=RPS... [more]
RS27A_HUMAN3.022e-1767.9240S ribosomal protein S27a OS=Homo sapiens GN=RPS2... [more]
RS27A_CAVPO3.022e-1767.9240S ribosomal protein S27a OS=Cavia porcellus GN=R... [more]
RS27A_BOVIN3.022e-1767.9240S ribosomal protein S27a OS=Bos taurus GN=RPS27A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832366 ID=CF832366; Name=CF832366; organism=Citrus sinensis; type=EST; length=645bp
AAAACAGATAACCATTTAATTCCATTGGTCAAGCAAACAAGTATATAGTC
AAACAAAATTACCAGAGAGTCGTAATTTTTGAACCACAAAAACCATAGTA
ATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCGATCAATCA
CCGCCAGCCTTCTGGTAAACATAGGGGAGTCCACACTTGCCGCAGTAGTG
CCTGGAAAAGTGGTTAGCCATGAAGGTGCCGGCTCCACACTCAGCATTCG
GACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGACCTTGTAA
AACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTTTT
CGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACCACGGAGAC
GGAGGACGAGGGGGAGTGTTGACTCCTTTTGGATGTTGAAGTCGGCTAGG
GGTCTGCCGTCCTCGAGCTGCTTTCCGGGGAAAATGAGACGCTGCTGGTC
CGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGACGATGG
TGCCCGATGATTCTACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTTTTC
ACGAAGATCTGCATGGCTGCCGATGAGGAGAGACCCAGCAAATTT
back to top