CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB2_DICDI (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.768e-35
Identity = 82/181 (45.30%), Postives = 113/181 (62.43%), Query Frame = 2
Query:  308 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTF-KSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            Q+R LN+HEYQ   LM KYG+N  K   V    +  KA  ++   + ELVVK+Q+ AGGRG G+F ++G KGGVH+ K  +E E L  +MLG+ LVTKQT  +G  V  V L E +    E+YFAI++DRK  GP++I   +GG  IE +AE+ P++I K PID+  GI  E    + + L
Sbjct:   23 QVRYLNLHEYQSKSLMDKYGVNTQKWRVVTKASDAIKAASEL---NGELVVKAQVHAGGRGKGSFIETGFKGGVHLCKTGKEAERLCDEMLGKHLVTKQTTKEGTKVQSVMLAESVDPKRELYFAIVMDRKYGGPVMIASPQGGVDIESVAEETPDLIFKEPIDIVKGIRPEQTKNLAEKL 200          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB_NEOFR (Succinyl-CoA ligase [GDP-forming] subunit beta, hydrogenosomal OS=Neocallimastix frontalis GN=SCSB PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 6.717e-35
Identity = 76/176 (43.18%), Postives = 114/176 (64.77%), Query Frame = 2
Query:  299 QQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            Q  Q R L++HEY    L+ +Y +N PKG+   + +E  +A + +  + ++LV+K+Q+LAGGRG G F SGL+GGV +    E+V+D A KMLG  L+TKQTG  G+  + VY+ E+     E YFAI+LDR T GP+++  S+GG  IE++A+  P+ I+ VP  +  G+T E A
Sbjct:   21 QTAQKRFLSVHEYCSMNLLHEYNVNAPKGIVAKTPEEAYQAAKKL--NTEDLVIKAQVLAGGRGKGHFDSGLQGGVKLCYTPEQVKDYASKMLGHKLITKQTGAAGRDCNAVYVVERQYAAREYYFAILLDRATRGPVLVASSEGGVEIEEVAKTNPDAILTVPFSIKTGLTREVA 194          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB2_PIG (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLG2 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.954e-34
Identity = 85/204 (41.67%), Postives = 121/204 (59.31%), Query Frame = 2
Query:  245 RGLLNKLVSRSLTVAGQWQQQQL---RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVE-DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            R LL  L  R   +A + Q  QL   R LN+ EYQ  +LM+  G+ V +     + +E  +A + +  + KE+V+K+QILAGGRG G F SGLKGGVH+ K  EV   LA +M+G  L TKQT  +G  V+KV + E L +  E Y AI++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L
Sbjct:   11 RKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENL 212          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB2_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLG2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.552e-34
Identity = 85/204 (41.67%), Postives = 121/204 (59.31%), Query Frame = 2
Query:  245 RGLLNKLVSRSLTVAGQWQQQQL---RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVE-DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            R LL  LV R   +A + Q  QL   R LN+ EYQ  +LM+  G+ V +     + +E  +A + +  + KE+V+K+QILAGGRG G F SGLKGGVH+ K  +V   LA +M+G  L TKQT  +G  V KV + E L +  E Y AI++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L
Sbjct:   10 RKLLRDLVLRPPLLAARSQVVQLTSRRWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPKVVGQLAKQMIGYNLATKQTPKEGVKVKKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENL 211          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB2_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Suclg2 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 3.334e-34
Identity = 77/178 (43.26%), Postives = 113/178 (63.48%), Query Frame = 2
Query:  314 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVE-DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            R LN+ EYQ  +LM+++G+ V +     +  E  +A + +  + KE+V+K+QILAGGRG G F SGLKGGVH+ K  +V  +LA +M+G  L TKQT  +G  V+KV + E L +  E Y AI++DR   GP+I+G  +GG  IE++A   P +I K  ID+F GI D  A ++ + L
Sbjct:   37 RWLNLQEYQSKKLMSEHGVRVQRFFVANTAKEALEAAKRL--NAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPKVVGELAQQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSHNGPVIVGSPQGGVDIEEVAASSPELIFKEQIDIFEGIKDSQAQRMAENL 212          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB2_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLG2 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.686e-34
Identity = 84/202 (41.58%), Postives = 119/202 (58.91%), Query Frame = 2
Query:  251 LLNKLVSRSLTVAGQWQQQQL---RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVE-DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            LL  L  R   +A   Q  QL   R LN+ EYQ  +LM+  G+ V +     + +E  +A + +  + KE+V+K+QILAGGRG G F SGLKGGVH+ K   V   LA +M+G  L TKQT  +G  V+KV + E L +  E Y AI++DR   GP+++G  +GG  IE++A   P +I K  ID+F GI D  A ++ + L
Sbjct:   12 LLRALALRPRFLAAGSQAVQLTSRRWLNLQEYQSKKLMSDNGVRVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPNVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENL 211          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB_YEAST (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=LSC2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.401e-32
Identity = 73/181 (40.33%), Postives = 117/181 (64.64%), Query Frame = 2
Query:  305 QQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            Q  R L+IHEY+ A+L+ +YGI  P+G    + +E  +A + +  +  +LV+K+Q L GGRG G F +G K GVH+++  ++ ED+A +ML   L+TKQTG  GK VS VY+ +++   +E Y +I++DR+T  P+II  S+GG +IE++AE+ P+ I K  I+   G++ + A  V   L
Sbjct:   26 QARRHLSIHEYRSAQLLREYGIGTPEGFPAFTPEEAFEAAKKL--NTNKLVIKAQALTGGRGKGHFDTGYKSGVHMIESPQQAEDVAKEMLNHNLITKQTGIAGKPVSAVYIVKRVDTKHEAYLSILMDRQTKKPMIIASSQGGMNIEEVAERTPDAIKKFSIETSKGLSPQMAKDVAKSL 204          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB1_CAEEL (Probable succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=F47B10.1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.322e-32
Identity = 81/196 (41.33%), Postives = 120/196 (61.22%), Query Frame = 2
Query:  251 LLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPK-GLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            ++ ++    L  + ++     R L +HE+ G +++  Y I VP  G+A  +     +A +      K+ VVK+Q+LAGGRG G F SGL+GGV IV   +EV+  AG M+G  L+TKQT  +GK   +V +C++L    E YF+I LDR T GPI+I  S+GG +IE++A   P+ IVK+PIDV  GIT E A ++
Sbjct:    1 MIGRISQPLLNTSQKFMAPAARTLMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRI---GGKDYVVKAQVLAGGRGKGRFSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEEVMVCKRLFTRREYYFSITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKELAHEI 193          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_OCHA4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=sucC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.022e-31
Identity = 79/179 (44.13%), Postives = 110/179 (61.45%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+  YG  +  G+AV SV++ ++  + +       VVKSQI AGGRG G FK   +  KGGV + K  EEV   A +MLG  LVTKQTGP GK V+++Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA+K+ D L
Sbjct:    1 MNIHEYQAKRLLHTYGAPIANGVAVYSVEQAEEWAKTL--PGPLYVVKSQIHAGGRGKGKFKELPADAKGGVRLAKSVEEVVANAKEMLGNTLVTKQTGPAGKQVNRLYIEDGADIDRELYLSILIDRTVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDASKLADAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_OPITP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.641e-31
Identity = 76/173 (43.93%), Postives = 100/173 (57.80%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 835
            +NIHEYQ   L  K+G+ VPKG    + +E   A   +      +VVKSQI AGGRG GTF  G KGGV + K K E  + AGKMLG  LVT QTGP G+ V  +Y      +  E Y AI+LDR T+ P+I+  ++GG  IE +A   P+ I KV +D   G+ D    ++V
Sbjct:    1 MNIHEYQAKALFEKFGVLVPKGAPAKTPEEFVTALAQL--PEGMIVVKSQIHAGGRGKGTFTDGFKGGVKVCKSKAEAREAAGKMLGNTLVTAQTGPAGRKVQTIYFNVGSQIKKEYYLAILLDRATSRPVIVASTEGGMEIEKVAHDTPDRIFKVHVDPAYGLADFQVRELV 171          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCB2_DICDI1.768e-3545.30Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB_NEOFR6.717e-3543.18Succinyl-CoA ligase [GDP-forming] subunit beta, hy... [more]
SUCB2_PIG1.954e-3441.67Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB2_BOVIN2.552e-3441.67Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB2_MOUSE3.334e-3443.26Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB2_HUMAN5.686e-3441.58Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB_YEAST1.401e-3240.33Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB1_CAEEL5.322e-3241.33Probable succinyl-CoA ligase [ADP-forming] subunit... [more]
SUCC_OCHA42.022e-3144.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_OPITP2.641e-3143.93Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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