CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_HYPNA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) GN=sucC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.364e-26
Identity = 74/179 (41.34%), Postives = 105/179 (58.66%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTF---KSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+  +G  V +G+ V S+ +V+KA  D  P     VVKSQI AGGRG G F   ++G KGGV +   KE+V+  A  MLG  LVT QT   GK V+++Y+ +   +  E+Y +I++DR T+    +  ++GG  IE +A   P  I+ V ID   G+T  DAAK+   L
Sbjct:    1 MNIHEYQAKALLKSFGAPVAEGVPVLSLADVQKAI-DTLPGPL-WVVKSQIHAGGRGKGKFIEKEAGEKGGVRLAFNKEDVKKHAEAMLGNHLVTAQTSAAGKQVNRLYIEDGADIEKELYLSILVDRATSNVAFVVSTEGGMDIEAVAHDTPEKILTVQIDPMAGVTPADAAKINSAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_AGRRK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=sucC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.364e-26
Identity = 71/179 (39.66%), Postives = 100/179 (55.87%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+  +G  V  G+A+ S DE + A + +       VVKSQI AGGRG G FK      KGGV + K  E+V   +  MLG  LVTKQTGP GK V+++Y+ +   +  E+Y +I++DR       +  ++GG  IE +A   P  I+ V ID   G+T  D+  + D L
Sbjct:    1 MNIHEYQAKALLKSFGAPVADGVAIFSADEAEAAAKQL--PGPLYVVKSQIHAGGRGKGKFKELSPDAKGGVRLAKSIEDVVANSKDMLGNTLVTKQTGPAGKQVNRLYIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIETVAHDTPEKIITVAIDPAAGVTAADSTAISDAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BORA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella avium (strain 197N) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.444e-26
Identity = 69/176 (39.20%), Postives = 102/176 (57.95%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG EL+ ++G+ VP+G+   SV+E   A + +       VVK+QI AGGRG G       GGV + +  +EV  LA ++LG  LVT QTG QG+ V+++Y+ +   +  E Y +++ DR T    +I  S+GG  IE++A   P  I+   ID   G+TD  A KV D +
Sbjct:    1 MKIHEYQGKELLKQFGVPVPRGIPAFSVEEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLARSLDEVRQLASQILGMQLVTHQTGAQGQKVNRLYIEDGADIQKEYYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEYIDPIVGLTDAQAKKVADAI 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus clausii (strain KSM-K16) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.444e-26
Identity = 68/172 (39.53%), Postives = 100/172 (58.14%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQG E++  YG+ VP G    SVDE  +A +++       VVK+QI AGGRG         GGV + K  +EV   A ++LG+ LVT QTGP GK V ++ + E   + +E Y  +++DR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++
Sbjct:    1 MNIHEYQGKEILRSYGVAVPNGKVAFSVDEAVEAAKEL--GSSVSVVKAQIHAGGRGKA-------GGVKVAKNLDEVRTYAEEILGKTLVTHQTGPAGKEVKRLLIEEGCDIKSEYYIGLVVDRATSSVVLMASEEGGTEIEEVAEKTPEKIFKEVIDPAVGLQGFQARRI 163          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RICTY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia typhi GN=sucC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26
Identity = 69/176 (39.20%), Postives = 99/176 (56.25%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ  E++ KYG+    GL V   +++ +A   +  + K  VVK+QI AGGRG         GGV +VK KEE + +A  M G  LVT QTGPQG+ V+ +Y+     ++ E YF+I+ DR  +    I  ++GG  IE +AEK P  I+K  +D   G+ D     +  GL
Sbjct:    1 MNIHEYQAKEILRKYGVPTSTGLVVTKTEKINEAIDKL--NTKVYVVKAQIHAGGRGKA-------GGVKVVKSKEEAKKVAHDMFGINLVTHQTGPQGQKVNHLYIESGCDILKEYYFSIVFDRSASCITFIASTEGGVDIEAVAEKMPEKIIKFAVDPATGLQDFHMRGIAYGL 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_GEOKA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus GN=sucC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26
Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHEYQ  E++  YG++VP G    +VDE  +A +++       VVK+QI AGGRG         GGV + K  EEV   A ++LG++LVT QTGP+GK V ++ + E   +  E Y  +++DR T+  +++G  +GGT IE++A K P  I K  ID   G+
Sbjct:    1 MNIHEYQAKEILRSYGVSVPNGRVAFTVDEAVEAAKEL--GAPVCVVKAQIHAGGRGKA-------GGVKVAKSLEEVRTYASELLGKVLVTHQTGPEGKEVKRLLIEEGCDIQKEYYIGLVVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYIDPAVGL 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BORPD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26
Identity = 68/176 (38.64%), Postives = 102/176 (57.95%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG EL+ ++G+ VP+G+   SVDE   A + +       VVK+QI AGGRG G       GGV + +  ++V  LA ++LG  LVT QTGP+G+ V+++Y+ +   +  E Y +++ DR T    II  S+GG  IE++A   P  I+   ID   G+  E A KV + +
Sbjct:    1 MKIHEYQGKELLKQFGVPVPRGIPAFSVDEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLARSLDDVRKLASEILGMQLVTHQTGPEGQKVNRLYIEDGADIQKEYYVSLVTDRATQKVAIIASSEGGMDIEEVAHSTPEKIITEYIDPLTGLQAEQAKKVAESI 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_WOLWR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 71/172 (41.28%), Postives = 98/172 (56.98%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQ  E++ K+ ++VPKG    S +EVK     +  D    VVK+QI AGGRG         GGV + K  EE +     M+G  LVT QTGP G+ V KVY+ E  S+  E Y ++++D K + PI I  S+GG  IE++A+  P  IVK  ID     T  D++K+
Sbjct:    1 MNIHEYQAKEVLHKFNVSVPKGFVATSAEEVKTQVSQLKSD--VFVVKAQIHAGGRGKA-------GGVKLAKSAEEAQQFVKDMIGMTLVTHQTGPSGQQVRKVYVEEGSSIKKEYYLSLVIDPKLSRPIFIFSSEGGMDIEEVAKNSPAKIVKFDID---SATSFDSSKL 160          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CUPTR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 68/169 (40.24%), Postives = 101/169 (59.76%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            +NIHEYQG E++ KY + VP+G+   SVDE  KA + +       VVK+QI AGGRG G       GGV + K  +EV+  A  +LG  LVT QTGP+GK V+++ + E   +  E+Y ++++DR +    ++  S+GG  IE++A   P  I  + I+   G+TD DA
Sbjct:    1 MNIHEYQGKEILRKYNVPVPRGIPAFSVDEALKAAEQL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSMDEVKTYASNILGMQLVTHQTGPEGKKVNRLLIEEGADIKKELYVSLVVDRVSQKIALMASSEGGMDIEEVAAHTPEKIHTLIIEPSTGLTDADA 160          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLT3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 65/171 (38.01%), Postives = 104/171 (60.82%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            +NIHEYQG E++  +G+ VPKG+   S +E KKA + +  +     +VVK+QI AGGRG         GGV +V+  +E  ++A +M+G  LVT QTGP+GK V ++ + E +++  E+Y  I LDR T+  +++  ++GG  IE +AE+ P  ++K+ I    G+    A
Sbjct:    1 MNIHEYQGKEILRGFGVTVPKGIVAFSAEEAKKAAETLLTEQGGGVVVVKAQIHAGGRGKA-------GGVKLVRSADEAFEVATQMIGTTLVTHQTGPEGKEVRRLLVEEGMNIEKELYLGITLDRATSCNVLMVSTEGGMEIEKVAEETPEKLLKIQIHPTLGLQPNQA 164          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_HYPNA4.364e-2641.34Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AGRRK4.364e-2639.66Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORA17.444e-2639.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACSK7.444e-2639.53Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RICTY9.722e-2639.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOKA9.722e-2640.24Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BORPD9.722e-2638.64Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_WOLWR1.270e-2541.28Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CUPTR1.270e-2540.24Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLT31.270e-2538.01Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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