CF832370
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_HYPNA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Hyphomonas neptunium (strain ATCC 15444) GN=sucC PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.364e-26 Identity = 74/179 (41.34%), Postives = 105/179 (58.66%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTF---KSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHEYQ L+ +G V +G+ V S+ +V+KA D P VVKSQI AGGRG G F ++G KGGV + KE+V+ A MLG LVT QT GK V+++Y+ + + E+Y +I++DR T+ + ++GG IE +A P I+ V ID G+T DAAK+ L Sbjct: 1 MNIHEYQAKALLKSFGAPVAEGVPVLSLADVQKAI-DTLPGPL-WVVKSQIHAGGRGKGKFIEKEAGEKGGVRLAFNKEDVKKHAEAMLGNHLVTAQTSAAGKQVNRLYIEDGADIEKELYLSILVDRATSNVAFVVSTEGGMDIEAVAHDTPEKILTVQIDPMAGVTPADAAKINSAL 177
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_AGRRK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=sucC PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.364e-26 Identity = 71/179 (39.66%), Postives = 100/179 (55.87%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHEYQ L+ +G V G+A+ S DE + A + + VVKSQI AGGRG G FK KGGV + K E+V + MLG LVTKQTGP GK V+++Y+ + + E+Y +I++DR + ++GG IE +A P I+ V ID G+T D+ + D L Sbjct: 1 MNIHEYQAKALLKSFGAPVADGVAIFSADEAEAAAKQL--PGPLYVVKSQIHAGGRGKGKFKELSPDAKGGVRLAKSIEDVVANSKDMLGNTLVTKQTGPAGKQVNRLYIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIETVAHDTPEKIITVAIDPAAGVTAADSTAISDAL 177
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BORA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella avium (strain 197N) GN=sucC PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 7.444e-26 Identity = 69/176 (39.20%), Postives = 102/176 (57.95%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 + IHEYQG EL+ ++G+ VP+G+ SV+E A + + VVK+QI AGGRG G GGV + + +EV LA ++LG LVT QTG QG+ V+++Y+ + + E Y +++ DR T +I S+GG IE++A P I+ ID G+TD A KV D + Sbjct: 1 MKIHEYQGKELLKQFGVPVPRGIPAFSVEEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLARSLDEVRQLASQILGMQLVTHQTGAQGQKVNRLYIEDGADIQKEYYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEYIDPIVGLTDAQAKKVADAI 167
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus clausii (strain KSM-K16) GN=sucC PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 7.444e-26 Identity = 68/172 (39.53%), Postives = 100/172 (58.14%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832 +NIHEYQG E++ YG+ VP G SVDE +A +++ VVK+QI AGGRG GGV + K +EV A ++LG+ LVT QTGP GK V ++ + E + +E Y +++DR T+ +++ +GGT IE++AEK P I K ID G+ A ++ Sbjct: 1 MNIHEYQGKEILRSYGVAVPNGKVAFSVDEAVEAAKEL--GSSVSVVKAQIHAGGRGKA-------GGVKVAKNLDEVRTYAEEILGKTLVTHQTGPAGKEVKRLLIEEGCDIKSEYYIGLVVDRATSSVVLMASEEGGTEIEEVAEKTPEKIFKEVIDPAVGLQGFQARRI 163
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RICTY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia typhi GN=sucC PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26 Identity = 69/176 (39.20%), Postives = 99/176 (56.25%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHEYQ E++ KYG+ GL V +++ +A + + K VVK+QI AGGRG GGV +VK KEE + +A M G LVT QTGPQG+ V+ +Y+ ++ E YF+I+ DR + I ++GG IE +AEK P I+K +D G+ D + GL Sbjct: 1 MNIHEYQAKEILRKYGVPTSTGLVVTKTEKINEAIDKL--NTKVYVVKAQIHAGGRGKA-------GGVKVVKSKEEAKKVAHDMFGINLVTHQTGPQGQKVNHLYIESGCDILKEYYFSIVFDRSASCITFIASTEGGVDIEAVAEKMPEKIIKFAVDPATGLQDFHMRGIAYGL 167
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_GEOKA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus GN=sucC PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26 Identity = 66/164 (40.24%), Postives = 98/164 (59.76%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808 +NIHEYQ E++ YG++VP G +VDE +A +++ VVK+QI AGGRG GGV + K EEV A ++LG++LVT QTGP+GK V ++ + E + E Y +++DR T+ +++G +GGT IE++A K P I K ID G+ Sbjct: 1 MNIHEYQAKEILRSYGVSVPNGRVAFTVDEAVEAAKEL--GAPVCVVKAQIHAGGRGKA-------GGVKVAKSLEEVRTYASELLGKVLVTHQTGPEGKEVKRLLIEEGCDIQKEYYIGLVVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYIDPAVGL 155
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BORPD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=sucC PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26 Identity = 68/176 (38.64%), Postives = 102/176 (57.95%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 + IHEYQG EL+ ++G+ VP+G+ SVDE A + + VVK+QI AGGRG G GGV + + ++V LA ++LG LVT QTGP+G+ V+++Y+ + + E Y +++ DR T II S+GG IE++A P I+ ID G+ E A KV + + Sbjct: 1 MKIHEYQGKELLKQFGVPVPRGIPAFSVDEAVAAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLARSLDDVRKLASEILGMQLVTHQTGPEGQKVNRLYIEDGADIQKEYYVSLVTDRATQKVAIIASSEGGMDIEEVAHSTPEKIITEYIDPLTGLQAEQAKKVAESI 167
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_WOLWR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=sucC PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25 Identity = 71/172 (41.28%), Postives = 98/172 (56.98%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832 +NIHEYQ E++ K+ ++VPKG S +EVK + D VVK+QI AGGRG GGV + K EE + M+G LVT QTGP G+ V KVY+ E S+ E Y ++++D K + PI I S+GG IE++A+ P IVK ID T D++K+ Sbjct: 1 MNIHEYQAKEVLHKFNVSVPKGFVATSAEEVKTQVSQLKSD--VFVVKAQIHAGGRGKA-------GGVKLAKSAEEAQQFVKDMIGMTLVTHQTGPSGQQVRKVYVEEGSSIKKEYYLSLVIDPKLSRPIFIFSSEGGMDIEEVAKNSPAKIVKFDID---SATSFDSSKL 160
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CUPTR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=sucC PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25 Identity = 68/169 (40.24%), Postives = 101/169 (59.76%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823 +NIHEYQG E++ KY + VP+G+ SVDE KA + + VVK+QI AGGRG G GGV + K +EV+ A +LG LVT QTGP+GK V+++ + E + E+Y ++++DR + ++ S+GG IE++A P I + I+ G+TD DA Sbjct: 1 MNIHEYQGKEILRKYNVPVPRGIPAFSVDEALKAAEQL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSMDEVKTYASNILGMQLVTHQTGPEGKKVNRLLIEEGADIKKELYVSLVVDRVSQKIALMASSEGGMDIEEVAAHTPEKIHTLIIEPSTGLTDADA 160
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLT3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=sucC PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25 Identity = 65/171 (38.01%), Postives = 104/171 (60.82%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823 +NIHEYQG E++ +G+ VPKG+ S +E KKA + + + +VVK+QI AGGRG GGV +V+ +E ++A +M+G LVT QTGP+GK V ++ + E +++ E+Y I LDR T+ +++ ++GG IE +AE+ P ++K+ I G+ A Sbjct: 1 MNIHEYQGKEILRGFGVTVPKGIVAFSAEEAKKAAETLLTEQGGGVVVVKAQIHAGGRGKA-------GGVKLVRSADEAFEVATQMIGTTLVTHQTGPEGKEVRRLLVEEGMNIEKELYLGITLDRATSCNVLMVSTEGGMEIEKVAEETPEKLLKIQIHPTLGLQPNQA 164 The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bpback to top |