CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURTA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 65/169 (38.46%), Postives = 102/169 (60.36%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G    SVDE  K  +++       VVK+QI AGGRG G       GGV + K  ++V + A ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAEEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLDQVREYANQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSTGLQDAEA 160
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURPS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q++       VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEA 160
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURP6 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 668) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q++       VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEA 160
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURP1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 1710b) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q++       VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEA 160
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURP0 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia pseudomallei (strain 1106a) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q++       VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEA 160
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURMS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain SAVP1) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q++       VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEA 160
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURMA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q++       VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEA 160
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURM9 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain NCTC 10229) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q++       VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEA 160
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BURM7 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Burkholderia mallei (strain NCTC 10247) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 66/169 (39.05%), Postives = 102/169 (60.36%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            + IHEYQG E++ K+G+ VP+G    SVDE  K  Q++       VVK+QI AGGRG G       GGV + K  E+V + + ++LG  L T QTGP+G+ V+++ + E   +  E+Y  I++DR +   +++  S+GG  IE++AEK P  I KV ++   G+ D +A
Sbjct:    1 MKIHEYQGKEILRKFGVAVPRGKPAFSVDEAVKVAQEL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSLEQVREYSNQILGMQLKTHQTGPEGQKVNRLLIEEGADIKKELYVGIVIDRVSQKVVVMASSEGGMDIEEVAEKTPEAIHKVAVEPSVGLQDAEA 160
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus subtilis GN=sucC PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.270e-25
Identity = 65/172 (37.79%), Postives = 102/172 (59.30%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQG E++ KYG++VP+G    + +E  ++ + +       VVK+QI AGGRG         GGV I K  +EV+  A ++LG+ LVT QTGP G+++ ++ + E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++
Sbjct:    1 MNIHEYQGKEVLRKYGVSVPEGKVAFTAEEAVESAKSL--SSSVYVVKAQIHAGGRGKA-------GGVKIAKSLDEVKAYAEELLGKTLVTHQTGPDGQVIKRLLIEEGCDIKKEYYIGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIKKAVIDPAVGLQGYQAREI 163
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_BURTA1.270e-2538.46Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURPS1.270e-2539.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP61.270e-2539.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP11.270e-2539.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURP01.270e-2539.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURMS1.270e-2539.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURMA1.270e-2539.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURM91.270e-2539.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BURM71.270e-2539.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACSU1.270e-2537.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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