CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHORT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=sucC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 69/168 (41.07%), Postives = 101/168 (60.12%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGIT 811
            +NIHEYQ  +++AKYG+ V KG    + +E +K   D+       VVKSQI AGGRG G FK   +G KGGV +VK  +EV   A +MLG  LVT Q+G +GK V +VY+ +   +  E+Y ++++DR T+   ++  ++GG  IE++A   P  I    ID   GI+
Sbjct:    1 MNIHEYQAKQVLAKYGVPVLKGGVAYTAEEAEKVALDLAGP--VYVVKSQIHAGGRGKGHFKEPSAGDKGGVRVVKSTDEVFSNAKQMLGATLVTHQSGAEGKEVKRVYIEDGCDIKRELYLSLLVDRATSAVTVMASTEGGMDIEEVANHSPEKIFFQAIDQATGIS 166          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHOP5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=sucC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHEYQ   ++  +G+++ KG+A+    E + A + +       VVKSQI AGGRG G FK   +G +GGV + K  +EV+  A +MLG  LVT QTGP GK V+++Y+ E  ++  E Y ++++DR T+    +  ++GG +IED+A   P  I+   +D   GI
Sbjct:    1 MNIHEYQAKAVLQPFGVSLSKGVAILKASEAEAAAKQL--PGPVWVVKSQIHAGGRGKGKFKEASAGSQGGVRLAKSIDEVKQFAQEMLGATLVTLQTGPAGKQVNRLYIEEGSAIDKEFYLSLLVDRATSRVSFVVSTEGGMNIEDVAHDTPEKIISFSVDPATGI 165          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_POLNA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Polaromonas naphthalenivorans (strain CJ2) GN=sucC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 66/176 (37.50%), Postives = 102/176 (57.95%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG E++  +G+ VP+G+   +V E  +A Q +       VVK+QI AGGRG G       GGV + K  E+V+ +AG++LG  L T QTGP+G+ V ++Y+ +   +  E Y +++ DR T     I  S+GG  IE++A   P  I+   ID   G+ +E A K+ +G+
Sbjct:    1 MKIHEYQGKEILRNFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKTIEDVKRIAGEILGMQLKTHQTGPEGQKVRRLYIEDGADIQKEYYVSLVTDRATQKVAFIASSEGGMDIEEVAHSTPEKIITEFIDPLTGLGEEQAVKIANGI 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PERMH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=sucC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 70/174 (40.23%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV--FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            + +HE+Q  E+ A+YG+ VPKG    +V+E  +A Q +  FP    +VVK+QI AGGRG         GGV +    +EV+  A ++LG+ LVT QTGP+G  VS++Y+ E  ++  E Y AI LDR  +  II+  S+GG  IE++A K P  I+   ID F G+    A ++
Sbjct:    1 MKVHEHQAKEIFARYGLPVPKGYPAFTVEEAVEAAQQLGKFP----VVVKAQIHAGGRGKA-------GGVKLANNLDEVQKYAAELLGKTLVTFQTGPEGLPVSRIYIEEGTNIDKEFYVAITLDRSKSKLIIMASSEGGMEIEEVAAKNPEAIITEVIDPFLGLRPYQAREI 163          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_OLICO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=sucC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 68/179 (37.99%), Postives = 101/179 (56.42%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   ++ ++G++V KG+ +    + + A + +       VVKSQI AGGRG G FK   +G KGGV + K  +EV+    +MLG+ LVT QTGP GK V+++YL E   +  E Y + ++DR+T+    +  ++GG  IE +A   P  IV   +D   GI      KV   L
Sbjct:    1 MNIHEYQAKAVLREFGVSVSKGVPILKASDAEAAAKQL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVKQFVDQMLGKTLVTVQTGPAGKQVNRLYLEEGADIDKEFYLSALVDRETSRIAFVVSTEGGMDIEKVAHDTPEKIVTFSVDPATGIMPHHGRKVAQAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_GEOLS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=sucC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 67/172 (38.95%), Postives = 104/172 (60.47%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQ  E+++ YGI VP+     + D+V++A + +   H   VVK+QI AGGRG         GGV +V   E+  D+A ++ G+ LVTKQTGP+G  V ++ + E + +  E Y +I LDR+T+   +I  ++GG  IE++A+K P+ I  + ID F G+    A K+
Sbjct:    1 MNIHEYQAKEILSTYGIPVPRNRVALTADQVERAAK-MMGGH--CVVKAQIYAGGRGKA-------GGVKLVHHPEQASDVAKELFGKRLVTKQTGPEGLKVRRILVEETVEIAREFYLSITLDRETSRYCLIASAEGGMDIEEVAQKSPDKIHVLTIDPFTGLRTYQARKI 162          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ERYLH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Erythrobacter litoralis (strain HTCC2594) GN=sucC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 71/167 (42.51%), Postives = 102/167 (61.08%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDE-VKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +N+HEYQ  EL+AKYGI +P G A  +V+E V  A Q   P +   VVK+QI AGGRG G FK      KGGV + K  E+VE  A +MLG  LVT QTG +GK V+++Y+ + + + +E Y ++++DR +    +I  ++GG  IE++A   P  I  + ID   G
Sbjct:    1 MNLHEYQAKELLAKYGIGIPAGHAALTVEEAVAGAKQLPGPLY---VVKAQIHAGGRGKGKFKELGPDAKGGVRLAKSIEDVEASAREMLGNTLVTVQTGEEGKQVNRLYVTDGVDIASEYYLSMVVDRASGRVGMIVSTEGGMDIEEVAHSTPEKITTITIDPAQG 164          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BRAJA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium japonicum GN=sucC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 69/179 (38.55%), Postives = 102/179 (56.98%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+ ++G+ + KG+ V    + + A + +       VVKSQI AGGRG G FK   +G KGGV I K   EV + A +MLG  LVT QTGP GK V+++Y+ +   +  E Y ++++DR+T+    +  ++GG +IED+A   P  IV   +D   GI       V + L
Sbjct:    1 MNIHEYQAKALLGEFGVPISKGVPVLKAADAEAAAKAL--PGPVYVVKSQIHAGGRGKGKFKEASAGDKGGVRIAKSAAEVSEFAKQMLGATLVTIQTGPAGKQVNRLYIEDGSDIDKEFYLSLLVDRETSRVSFVVSTEGGVNIEDVAHNTPEKIVTFSVDPATGIMGHHGRTVANAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=sucC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 68/172 (39.53%), Postives = 99/172 (57.56%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQG  ++  YG++VP G    +V+E  +A +++  D    VVK+QI AGGRG         GGV + K  EEV   A  +LG  LVT QTGP+GK V ++ + E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  I K  ID   G+    A ++
Sbjct:    1 MNIHEYQGKAILRSYGVSVPNGKVAFTVEEAVEAAKELGTD--VCVVKAQIHAGGRGKA-------GGVKVAKNLEEVRTYAENILGSTLVTHQTGPEGKEVKRLLIEEGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRI 163          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_DIAST (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Diaphorobacter sp. (strain TPSY) GN=sucC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.166e-25
Identity = 67/172 (38.95%), Postives = 101/172 (58.72%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            + IHEYQG E++  +G+ VP+G+   +V E  +A Q +       VVK+QI AGGRG G       GGV + K  ++V+  A ++LG  LVT QTGP+G+ V ++Y+ +   + NE+Y +++ DR T    +I  S+GG  IE++A   P  I+   ID   GIT E + KV
Sbjct:    1 MKIHEYQGKEILRSFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKTIDDVKARASEILGMQLVTHQTGPEGQKVRRLYIEDGADIKNELYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEMIDPLTGITPEQSKKV 163          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_RHORT1.658e-2541.07Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOP51.658e-2538.92Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_POLNA1.658e-2537.50Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PERMH1.658e-2540.23Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_OLICO1.658e-2537.99Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOLS1.658e-2538.95Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ERYLH1.658e-2542.51Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRAJA1.658e-2538.55Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACCN1.658e-2539.53Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_DIAST2.166e-2538.95Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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