CF832370
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHORT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=sucC PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25 Identity = 69/168 (41.07%), Postives = 101/168 (60.12%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGIT 811 +NIHEYQ +++AKYG+ V KG + +E +K D+ VVKSQI AGGRG G FK +G KGGV +VK +EV A +MLG LVT Q+G +GK V +VY+ + + E+Y ++++DR T+ ++ ++GG IE++A P I ID GI+ Sbjct: 1 MNIHEYQAKQVLAKYGVPVLKGGVAYTAEEAEKVALDLAGP--VYVVKSQIHAGGRGKGHFKEPSAGDKGGVRVVKSTDEVFSNAKQMLGATLVTHQSGAEGKEVKRVYIEDGCDIKRELYLSLLVDRATSAVTVMASTEGGMDIEEVANHSPEKIFFQAIDQATGIS 166
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHOP5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=sucC PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25 Identity = 65/167 (38.92%), Postives = 101/167 (60.48%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808 +NIHEYQ ++ +G+++ KG+A+ E + A + + VVKSQI AGGRG G FK +G +GGV + K +EV+ A +MLG LVT QTGP GK V+++Y+ E ++ E Y ++++DR T+ + ++GG +IED+A P I+ +D GI Sbjct: 1 MNIHEYQAKAVLQPFGVSLSKGVAILKASEAEAAAKQL--PGPVWVVKSQIHAGGRGKGKFKEASAGSQGGVRLAKSIDEVKQFAQEMLGATLVTLQTGPAGKQVNRLYIEEGSAIDKEFYLSLLVDRATSRVSFVVSTEGGMNIEDVAHDTPEKIISFSVDPATGI 165
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_POLNA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Polaromonas naphthalenivorans (strain CJ2) GN=sucC PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25 Identity = 66/176 (37.50%), Postives = 102/176 (57.95%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 + IHEYQG E++ +G+ VP+G+ +V E +A Q + VVK+QI AGGRG G GGV + K E+V+ +AG++LG L T QTGP+G+ V ++Y+ + + E Y +++ DR T I S+GG IE++A P I+ ID G+ +E A K+ +G+ Sbjct: 1 MKIHEYQGKEILRNFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKTIEDVKRIAGEILGMQLKTHQTGPEGQKVRRLYIEDGADIQKEYYVSLVTDRATQKVAFIASSEGGMDIEEVAHSTPEKIITEFIDPLTGLGEEQAVKIANGI 167
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PERMH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=sucC PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25 Identity = 70/174 (40.23%), Postives = 103/174 (59.20%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV--FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832 + +HE+Q E+ A+YG+ VPKG +V+E +A Q + FP +VVK+QI AGGRG GGV + +EV+ A ++LG+ LVT QTGP+G VS++Y+ E ++ E Y AI LDR + II+ S+GG IE++A K P I+ ID F G+ A ++ Sbjct: 1 MKVHEHQAKEIFARYGLPVPKGYPAFTVEEAVEAAQQLGKFP----VVVKAQIHAGGRGKA-------GGVKLANNLDEVQKYAAELLGKTLVTFQTGPEGLPVSRIYIEEGTNIDKEFYVAITLDRSKSKLIIMASSEGGMEIEEVAAKNPEAIITEVIDPFLGLRPYQAREI 163
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_OLICO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=sucC PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25 Identity = 68/179 (37.99%), Postives = 101/179 (56.42%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHEYQ ++ ++G++V KG+ + + + A + + VVKSQI AGGRG G FK +G KGGV + K +EV+ +MLG+ LVT QTGP GK V+++YL E + E Y + ++DR+T+ + ++GG IE +A P IV +D GI KV L Sbjct: 1 MNIHEYQAKAVLREFGVSVSKGVPILKASDAEAAAKQL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVKQFVDQMLGKTLVTVQTGPAGKQVNRLYLEEGADIDKEFYLSALVDRETSRIAFVVSTEGGMDIEKVAHDTPEKIVTFSVDPATGIMPHHGRKVAQAL 177
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_GEOLS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=sucC PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25 Identity = 67/172 (38.95%), Postives = 104/172 (60.47%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832 +NIHEYQ E+++ YGI VP+ + D+V++A + + H VVK+QI AGGRG GGV +V E+ D+A ++ G+ LVTKQTGP+G V ++ + E + + E Y +I LDR+T+ +I ++GG IE++A+K P+ I + ID F G+ A K+ Sbjct: 1 MNIHEYQAKEILSTYGIPVPRNRVALTADQVERAAK-MMGGH--CVVKAQIYAGGRGKA-------GGVKLVHHPEQASDVAKELFGKRLVTKQTGPEGLKVRRILVEETVEIAREFYLSITLDRETSRYCLIASAEGGMDIEEVAQKSPDKIHVLTIDPFTGLRTYQARKI 162
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ERYLH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Erythrobacter litoralis (strain HTCC2594) GN=sucC PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25 Identity = 71/167 (42.51%), Postives = 102/167 (61.08%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDE-VKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805 +N+HEYQ EL+AKYGI +P G A +V+E V A Q P + VVK+QI AGGRG G FK KGGV + K E+VE A +MLG LVT QTG +GK V+++Y+ + + + +E Y ++++DR + +I ++GG IE++A P I + ID G Sbjct: 1 MNLHEYQAKELLAKYGIGIPAGHAALTVEEAVAGAKQLPGPLY---VVKAQIHAGGRGKGKFKELGPDAKGGVRLAKSIEDVEASAREMLGNTLVTVQTGEEGKQVNRLYVTDGVDIASEYYLSMVVDRASGRVGMIVSTEGGMDIEEVAHSTPEKITTITIDPAQG 164
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BRAJA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium japonicum GN=sucC PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25 Identity = 69/179 (38.55%), Postives = 102/179 (56.98%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844 +NIHEYQ L+ ++G+ + KG+ V + + A + + VVKSQI AGGRG G FK +G KGGV I K EV + A +MLG LVT QTGP GK V+++Y+ + + E Y ++++DR+T+ + ++GG +IED+A P IV +D GI V + L Sbjct: 1 MNIHEYQAKALLGEFGVPISKGVPVLKAADAEAAAKAL--PGPVYVVKSQIHAGGRGKGKFKEASAGDKGGVRIAKSAAEVSEFAKQMLGATLVTIQTGPAGKQVNRLYIEDGSDIDKEFYLSLLVDRETSRVSFVVSTEGGVNIEDVAHNTPEKIVTFSVDPATGIMGHHGRTVANAL 177
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=sucC PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25 Identity = 68/172 (39.53%), Postives = 99/172 (57.56%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832 +NIHEYQG ++ YG++VP G +V+E +A +++ D VVK+QI AGGRG GGV + K EEV A +LG LVT QTGP+GK V ++ + E + E Y ++LDR T+ +++ +GGT IE++AEK P I K ID G+ A ++ Sbjct: 1 MNIHEYQGKAILRSYGVSVPNGKVAFTVEEAVEAAKELGTD--VCVVKAQIHAGGRGKA-------GGVKVAKNLEEVRTYAENILGSTLVTHQTGPEGKEVKRLLIEEGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRI 163
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_DIAST (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Diaphorobacter sp. (strain TPSY) GN=sucC PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.166e-25 Identity = 67/172 (38.95%), Postives = 101/172 (58.72%), Query Frame = 2 Query: 320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832 + IHEYQG E++ +G+ VP+G+ +V E +A Q + VVK+QI AGGRG G GGV + K ++V+ A ++LG LVT QTGP+G+ V ++Y+ + + NE+Y +++ DR T +I S+GG IE++A P I+ ID GIT E + KV Sbjct: 1 MKIHEYQGKEILRSFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKTIDDVKARASEILGMQLVTHQTGPEGQKVRRLYIEDGADIKNELYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEMIDPLTGITPEQSKKV 163 The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bpback to top |