CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHOPB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain BisB18) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 67/179 (37.43%), Postives = 102/179 (56.98%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   ++  +G+++ KG+A+    + + A + +       VVKSQI AGGRG G FK   +G KGGV + K  EEV+  A +MLG  LVT QTGP GK V+++Y+ +   +  E Y ++++DR T+    +  ++GG +IED+A   P  I+   +D   GI       V   L
Sbjct:    1 MNIHEYQAKAVLQPFGVSLSKGVAILKATDAEAAAKQL--GGPIWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIEEVKQYAAEMLGATLVTIQTGPAGKQVNRLYIEDGSDIEKEFYLSLLVDRVTSRISFVVSTEGGMNIEDVAHDTPEKIISFSVDPATGIMGHHGRTVAKAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_POLSJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 66/176 (37.50%), Postives = 103/176 (58.52%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG E++  +G+ VP+G+   +V E  +A Q +       VVK+QI AGGRG G       GGV + K  ++V+ +AG++LG  L T QTGP+G+ V ++Y+ +   +  E Y + + DR++     I  S+GG  IE++A   P  I+KV +D   G+TD  A +V  G+
Sbjct:    1 MKIHEYQGKEILRNFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKTIDDVKRIAGEILGMQLKTHQTGPEGQKVRRLYIEDGADIQKEYYVSAVTDRESQKVAFIASSEGGMDIEEVAHSNPEKIIKVFVDPLVGMTDAQAKEVAAGI 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_JANSC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Jannaschia sp. (strain CCS1) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 67/166 (40.36%), Postives = 98/166 (59.04%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +NIHEYQ   L+A+YG  V  G  V   ++ K A  ++  D    VVK+QI AGGRG G FK   +G  GGV + K  +E  D A KMLG+ LVT QTGP GK V+++Y+ +   +  EMY A+++DR+++    +  ++GG  IE++A   P  I+   +D   G
Sbjct:    1 MNIHEYQAKALLAQYGAPVSDGRVVTKAEDAKTAAGEM--DGPLWVVKAQIHAGGRGKGKFKEADAGEAGGVRLAKSAQEAADEAKKMLGRTLVTHQTGPVGKQVNRIYIEDGSGIETEMYLALLVDRQSSRISFVCSTEGGMDIEEVAASTPEKILSFSVDPATG 164          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_SYNFM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 70/178 (39.33%), Postives = 102/178 (57.30%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV--FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQ  +L  KYG+ +P+G A  +V+E K    ++  FP    +VVK+QI AGGRG G       GGV + K   EV+  A  +LG  LVT QTGP+G++V K+ + E L +  E+Y +++ DR T+  + +    GG  IE++A K P  I+KV ID   G     A ++  GL
Sbjct:    1 MKIHEYQAKQLFQKYGVPIPRGKAAFTVEEAKAVGAELGTFP----VVVKAQIHAGGRGKG-------GGVKLAKSAAEVDQYAKGILGMTLVTHQTGPEGRLVKKLLVEEGLPIEKELYLSVLPDRGTSKIVFMASEAGGMDIEEVAAKTPEKIIKVFIDPLLGFKGFHANELAYGL 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RICPR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rickettsia prowazekii GN=sucC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 64/166 (38.55%), Postives = 95/166 (57.23%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITD 814
            +NIHEYQ  E++ KYG+    GL V   +++ +    +  + K  V+K+QI AGGRG         GGV + K KEE + +A  M G  LVT QTGPQG+ V+++Y+     ++ E YF+I+ DR  +    I  ++GG  IE +AEK P  I+K  +D   G+ D
Sbjct:    1 MNIHEYQAKEILRKYGVPTSTGLVVTKTEKINETIDKL--NTKVYVIKAQIHAGGRGKA-------GGVKVAKSKEEAKKVAHDMFGINLVTHQTGPQGQKVNRIYIESGCDILKEYYFSIVFDRSASCITFIASTEGGVDIEAVAEKMPEKIIKFAVDPATGLQD 157          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_GEOSW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus sp. (strain WCH70) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 64/164 (39.02%), Postives = 98/164 (59.76%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHEYQ  E++  YG++VP G    +V+E  +A +++       VVK+QI AGGRG         GGV + K  +EV   A ++LG++LVT QTGP+GK V ++ + E   +  E Y  +++DR T+  +++G  +GGT IE++A K P  I K  ID   G+
Sbjct:    1 MNIHEYQAKEILRNYGVSVPNGRVAFTVEEAVEAAKEL--GSPVCVVKAQIHAGGRGKA-------GGVKVAKSLDEVRTYASELLGKVLVTHQTGPEGKEVKRLLIEEGCDIKKEYYIGLVVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYIDPAVGL 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BRASO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium sp. (strain ORS278) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 67/179 (37.43%), Postives = 102/179 (56.98%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+ ++G+ + KG+ V   ++   A + +       VVKSQI AGGRG G FK   +G KGGV + K  +EV   A +MLG  LVT QTGP GK V+++Y+ +   +  E Y ++++DR+T+    +  ++GG +IED+A + P  IV   +D   G+       V   L
Sbjct:    1 MNIHEYQAKALLHEFGVPISKGVPVLRPEDADAAAKTL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVNTFARQMLGATLVTVQTGPDGKQVNRLYIEDGSDIDKEFYLSLLVDRETSKVAFVVSTEGGVNIEDVAHETPEKIVTFSVDPATGVMGHHGRAVAKAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BDEBA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bdellovibrio bacteriovorus GN=sucC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.825e-25
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHEYQ  E++ K+G+   KG    S +E   A +++       VVK+QI AGGRG G       GGV + K  +EV +   KM+G  LVT QTGP+GK+V KV++ +  ++  E Y A ++DR T    ++  S+GG  IE++AE  P+ I KV ID   G+
Sbjct:    1 MNIHEYQAKEVLRKFGVATLKGKLAHSPEEAVAAAKEI--GGSVWVVKAQIHAGGRGKG-------GGVKVAKSLDEVSEFTKKMIGMTLVTHQTGPEGKVVQKVFIEQGCNIAKEYYVACLIDRATGRAAMMASSEGGMDIEEVAEHNPDAIKKVDIDPTVGL 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_WOLPM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Wolbachia pipientis wMel GN=sucC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 68/159 (42.77%), Postives = 90/159 (56.60%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID 793
            +NIHEYQ  E+  K+ + VPKG    S +EVK     +  D    VVK+QI AGGRG         GGV + K  EE +     M+G  LVT QTGP G+ V KVY+ E  S+  E Y ++++D K + PI I  S+GG  IE++A+  P  IVK  ID
Sbjct:    1 MNIHEYQAKEVFHKFNVPVPKGFVATSAEEVKTQVSQLKSD--VFVVKAQIHAGGRGKA-------GGVKLAKSVEEAQQFVKDMIGMTLVTHQTGPSGQQVRKVYVEEGSSIKKEYYLSLVIDPKLSRPIFIFSSEGGMDIEEVAKNSPAKIVKFDID 150          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_VEREI (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Verminephrobacter eiseniae (strain EF01-2) GN=sucC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 68/176 (38.64%), Postives = 99/176 (56.25%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + IHEYQG +++ ++G+ VP+G+   +V E  +A Q +       VVK+QI AGGRG G       GGV + K  +EV  LAG MLG  L T QTGP+G+ V ++Y+ E   +  E Y +I+ DR T     I  S+GG  IE++    P MI+   +D   G+  E A K+  G+
Sbjct:    1 MKIHEYQGKDILRQFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVQLAKTIDEVRRLAGSMLGMQLKTHQTGPEGQKVRRLYIEEGADIGKEYYLSIVTDRATQKLAFIASSEGGMDIEEVKRAKPEMIITEFVDPLAGLGPEQALKIAVGI 167          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_RHOPB3.694e-2537.43Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_POLSJ3.694e-2537.50Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_JANSC3.694e-2540.36Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SYNFM4.825e-2539.33Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RICPR4.825e-2538.55Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOSW4.825e-2539.02Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRASO4.825e-2537.43Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BDEBA4.825e-2540.24Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_WOLPM6.302e-2542.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VEREI6.302e-2538.64Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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