CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BRUA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brucella abortus (strain S19) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.236e-30
Identity = 78/179 (43.58%), Postives = 108/179 (60.34%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+  YG  +  G+AV SV++ ++  + +       VVKSQI AGGRG G FK   +  KGGV + K  EEV   A +MLG  LVTKQTG  GK V+++Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  IV V ID   G+TDEDA K+ D L
Sbjct:    1 MNIHEYQAKRLLHTYGAPIANGVAVYSVEQAEEWAKTL--PGPLYVVKSQIHAGGRGKGKFKELPADAKGGVRLAKSVEEVVANAKEMLGNTLVTKQTGEAGKQVNRLYIEDGADIERELYLSILIDRSVGRPAFVVSTEGGMDIEAVAEETPEKIVTVAIDPAKGVTDEDANKLADAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_RHOCS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=sucC PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.506e-30
Identity = 75/178 (42.13%), Postives = 107/178 (60.11%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGL--KGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+ KYG+ VP+G    +++E +   +++       VVKSQI AGGRG G FK     KGGV +VK  ++V      MLG++LVTKQTGP+GK V ++Y+ E   +  E+Y +++LDR T+   I+  ++GG  IE++A   P  IVKV ID   G+    A KV   L
Sbjct:    1 MNIHEYQAKSLLKKYGVAVPRGGVAYTLEEARAVAKEL--GGPVWVVKSQIHAGGRGAGRFKDDPNGKGGVRVVKSIDDVVASTDAMLGKVLVTKQTGPEGKEVKRIYVEEGADIKRELYLSMLLDRATSRITIVASTEGGMEIEEVAHTSPEKIVKVAIDPVQGLQGYHARKVAFAL 176          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_DESAA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Desulfatibacillum alkenivorans (strain AK-01) GN=sucC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.472e-29
Identity = 74/166 (44.58%), Postives = 106/166 (63.86%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV--FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            + IHEYQ  EL A YG+ VPKG  V SVDE  +A +++  FP    +VVK+QI AGGRG G       GGV + +  +EV+ +AG++LG  LVT QTGP+G+ V K+ + + L +  E+YF+I++DR TA  +I+    GG  IE++A   P  I+KVP+D   G+
Sbjct:    1 MKIHEYQAKELFANYGVPVPKGKPVFSVDEAVEAAKELGDFP----VVVKAQIHAGGRGKG-------GGVKLAQNIDEVKTIAGEILGMQLVTHQTGPEGQKVQKLLVEQGLDIAKELYFSIIVDRATAKIVIMCSEAGGMDIEEVAASTPEKIIKVPVDPLLGV 155          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLCH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobium chlorochromatii (strain CaD3) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.217e-29
Identity = 67/166 (40.36%), Postives = 105/166 (63.25%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPD--HKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHEYQG +++ K+G+ VPKG+   S DE K+A + +F +     +VVK+QI AGGRG         GGV + K  EE  ++A +M+G  L+T QTGP+GK+VS++ + E + +  E Y  I LDR T+  +++  ++GG  IE +AE+ P  ++K+ ID   G+
Sbjct:    1 MNIHEYQGKDILRKFGVTVPKGIVAYSADEAKQAAEQLFAETGSSVVVVKAQIHAGGRGKA-------GGVKLAKSPEEAFEIARQMIGMTLITHQTGPEGKVVSRLLIEEGMGIEKEFYVGITLDRATSRNVLMVSTEGGMEIETVAEETPEKLLKIQIDPLFGM 159          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BARBK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.217e-29
Identity = 75/179 (41.90%), Postives = 108/179 (60.34%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+ +YG  V  G+AV SV++ +K  + +       VVKSQI AGGRG G FK   S  KGGV + K  EEV     +MLG+ LVTKQTGP+GK V+++Y+ +  ++  E+Y ++++DR T     +  ++GG  IE +A + P  I  + ID   G+TD D  K+ D L
Sbjct:    1 MNIHEYQAKRLLHEYGAPVANGVAVYSVEQAEKWAKKL--PGPLYVVKSQIHAGGRGKGNFKELDSDAKGGVRLAKSVEEVVANVKEMLGKTLVTKQTGPEGKQVNRLYIEDGANIERELYLSLLIDRTTGRVAFVVSTEGGMDIETVAAETPEKICTLSIDPAEGVTDADCVKLCDEL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_SULDN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.508e-29
Identity = 72/176 (40.91%), Postives = 104/176 (59.09%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ  ++ AKYG+  PKGL   SV +     + +       VVK+QI AGGRGLG       GGV + +  EEVE L+ ++LG  LVT QTGP+GK+V K+Y+ E   +  E+Y  ++LDR    P+I+  ++GG +IED+A   P  I+K+ +D   G       ++V GL
Sbjct:    1 MNIHEYQAKQIFAKYGVPTPKGLMAESVKQAVANAETL--GGSIWVVKAQIHAGGRGLG-------GGVKLARSLEEVEQLSKEILGMTLVTHQTGPEGKLVQKLYIEEGADIKEELYLGVVLDRAREMPVIMASTEGGMAIEDVAHNTPEKIIKIAVDPAIGFQGFHGRELVFGL 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BART1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.508e-29
Identity = 72/179 (40.22%), Postives = 108/179 (60.34%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+ +YG  +  G+AV S+++ +K  + +       VVKSQI AGGRG G FK      KGGV + +  EEV     +MLG+ LVTKQTGP+GK V+++Y+ +   +  E+Y ++++DR       +  ++GG  IE +AE+ P  I  +PIDV  G+T  D A++ D L
Sbjct:    1 MNIHEYQAKRLLHEYGAPIANGVAVYSIEQAEKWAKKL--PGPLYVVKSQIHAGGRGKGQFKELGPDAKGGVRLAQSVEEVVANVQEMLGKTLVTKQTGPEGKQVNRLYIEDGADIERELYLSLLVDRSVGRIAFVVSTEGGMDIETVAEETPEKIFTLPIDVTEGVTSADCARLCDAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BACP2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus pumilus (strain SAFR-032) GN=sucC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.508e-29
Identity = 72/172 (41.86%), Postives = 107/172 (62.21%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQG E++ KYG++VP G    + DE  KA++++  +    VVK+QI AGGRG         GGV I K K+EV+  A ++LG+ LVT QTGP+G+ + ++ + E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  IVKV ID   G+    A +V
Sbjct:    1 MNIHEYQGKEILRKYGVSVPNGKVAFTPDEAVKASEEL--ESSVYVVKAQIHAGGRGKA-------GGVKIAKTKDEVKGFAEELLGKTLVTHQTGPEGREIKRLLIEEGCDIQKEYYVGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIVKVVIDPAIGLQGYQAREV 163          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BARHE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella henselae GN=sucC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.395e-29
Identity = 72/179 (40.22%), Postives = 108/179 (60.34%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+ +YG  +  G+AV SV++ +K  + +       VVKSQI AGGRG G FK      KGGV + K  EEV     +MLG+ LVTKQTGP+GK V+++Y+ +   +  E+Y ++++DR       +  ++GG  IE +AE+ P  I+ +PI+   G+T  D A++ D L
Sbjct:    1 MNIHEYQAKRLLHEYGAPIANGVAVYSVEQAEKWAKKL--PGPLYVVKSQIHAGGRGKGKFKELDPDAKGGVRLAKSVEEVVANVKEMLGKTLVTKQTGPEGKQVNRLYIEDGADIERELYLSLLVDRNVGRVAFVVSTEGGMDIETVAEETPEKILTLPINSTQGVTSSDCARLCDAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_ACIBL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidobacteria bacterium (strain Ellin345) GN=sucC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.395e-29
Identity = 72/173 (41.62%), Postives = 104/173 (60.12%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDH-KELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            + IHEYQG  ++ KYG+ VP+G  V + +E ++   D+  D  K +VVK+QI AGGRG G       GGV I K  +E   LAGK+LG  L+T QTGP+GK V ++ + E L +  E+Y +I+LDR    P+ +  + GG  IE++A K PN I+K  I+   G+    A K+
Sbjct:    1 MKIHEYQGKAILRKYGVAVPRGEMVTTREEAERVANDLMHDGAKGVVVKAQIHAGGRGKG-------GGVKIAKSVDEAGQLAGKILGMTLITHQTGPEGKKVQRLLIEETLPIERELYLSIVLDRSNGKPVFMASAAGGMEIEEVAAKDPNAIIKEWIEPGYGLGAFQARKI 166          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_BRUA12.236e-3043.58Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOCS6.506e-3042.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_DESAA2.472e-2944.58Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLCH4.217e-2940.36Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARBK4.217e-2941.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SULDN5.508e-2940.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BART15.508e-2940.22Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACP25.508e-2941.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARHE9.395e-2940.22Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIBL9.395e-2941.62Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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