CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLL2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=sucC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.227e-28
Identity = 67/166 (40.36%), Postives = 107/166 (64.46%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHEYQG +++ K+G++VP+G+   S DE K+A Q +F +     +VVK+QI AGGRG         GGV + K  +E  ++A +MLG  LVT QTGP+GK VS++ + E +++  E Y  I LDR T+  +++  ++GG  IE +AE+ P+ ++K+ +D   G+
Sbjct:    1 MNIHEYQGKDILKKFGVSVPRGIVAFSPDEAKQAAQQLFEEQGSPVVVVKAQIHAGGRGKA-------GGVKLAKSPDEAMEIARQMLGATLVTHQTGPEGKQVSRLLVEEGMNIDREFYVGITLDRSTSRNVLMVSTEGGMEIEKVAEETPDKLLKIQVDPLYGL 159          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PELLD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pelodictyon luteolum (strain DSM 273) GN=sucC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.093e-28
Identity = 66/166 (39.76%), Postives = 105/166 (63.25%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFP--DHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHEYQG +++ K+G+ VPKG+   S +E K+A + +F   D   +V+K+QI AGGRG         GGV + K  EE  ++A +MLG  LVT QTGP+GK V ++ + E +++  E Y  I LDR T+  +++  ++GG  IE +AE+ P +++K+ +D   G+
Sbjct:    1 MNIHEYQGKDILRKFGVAVPKGIVAYSAEEAKQAAEQLFAEQDSPVVVIKAQIHAGGRGKA-------GGVKLAKSPEEAHEIASQMLGTTLVTHQTGPEGKEVRRLLVEEGMNIDREFYVGITLDRATSNNVLMISTEGGMEIEKVAEETPELLLKIQVDARFGL 159          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_NAUPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=sucC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.093e-28
Identity = 72/176 (40.91%), Postives = 104/176 (59.09%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ  E+  KYG+  P+G    +  E ++  +++       VVK+QI AGGRG         GGV + K  +EVE +A +MLG  LVT QTGP+GK+V KVY+ E   + +E+Y  ++LDR    P+++  ++GG  IE++AEK P  I+KV ID   G     A K+  GL
Sbjct:    1 MNIHEYQAKEIFRKYGVPTPRGGVAFTGPEARRVAEEL--GGNLWVVKAQIHAGGRGKA-------GGVKLAKSLDEVEKIAEEMLGMTLVTHQTGPEGKVVKKVYIEEGADIKDELYLGMVLDRALEMPVMMASTEGGMEIEEVAEKTPEKIIKVAIDPAIGFQPFHARKLAFGL 167          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLPB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobium phaeobacteroides (strain BS1) GN=sucC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.093e-28
Identity = 66/166 (39.76%), Postives = 108/166 (65.06%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI 808
            +NIHEYQG +++ K+G++VPKG+   S  E ++A + +F + +   +VVK+QI AGGRG         GGV + +  EE  ++AG++LG  LVT QTGP+GK V ++ + E +++  E Y  I LDR T+  +++  ++GG  IE +AE+ P+ I+K+ ID  +G+
Sbjct:    1 MNIHEYQGKDILRKFGVSVPKGIVAFSPAEARQAAEQLFEEQESNVVVVKAQIHAGGRGKA-------GGVKLAQSPEEAYEIAGQILGATLVTHQTGPEGKEVRRLLVEEGMNIEKEFYVGITLDRATSNNVLMVSTEGGMEIEKVAEETPDKILKIQIDPLHGL 159          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCB2_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C50F7.4 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.093e-28
Identity = 72/184 (39.13%), Postives = 111/184 (60.33%), Query Frame = 2
Query:  302 QQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKG--GVHIVKKEEVE-DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            + Q R LN+ E+Q  E++ K+G +V   +  ++  E ++     F DH E VVK+QILAGGRG G F +G KG  GV I K+++   +   +M+G+ LVTKQT  +G  V KV + E + +  E Y A+++DR++ GP+++    GG  IE +AEK P  I K PID+  G+T+  + K+   L
Sbjct:   14 KSQRRFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMS-FGDH-EYVVKAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKVMIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMTEGQSLKIAKDL 195          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_CHLTE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobium tepidum GN=sucC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.733e-28
Identity = 69/173 (39.88%), Postives = 106/173 (61.27%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAK 829
            +NIHEYQG  ++ ++G+ VPKG+   S +E K+A + +F +     +VVK+QI AGGRG         GGV + K  EEV ++A KMLG  LVT QTGP+GK V ++ + E +++  E Y  I LDR T+  +++  ++GG  IE +AE+ P  ++K+ +D   G+    A K
Sbjct:    1 MNIHEYQGKGILKQFGVAVPKGIVAFSAEEAKQAAEQLFEEQSSPVVVVKAQIHAGGRGKA-------GGVKLAKSPEEVFEIAQKMLGATLVTHQTGPEGKEVRRLLIEEGMNIDKEFYLGITLDRTTSSNVLMVSTEGGMEIEKVAEETPEKLLKIHVDPVYGLQGFQARK 166          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_BARQU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella quintana GN=sucC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.662e-28
Identity = 70/179 (39.11%), Postives = 106/179 (59.22%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+ +YG  +  G+AV S+++ +K  + +       VVKSQI AGGRG G FK      KGGV + K  EEV     +MLG+ LVTKQTGP+GK V+++Y+ +   +  E+Y ++++DR       +   +GG  IE +AE+ P  I+ +P+D   G+T  D  ++ D L
Sbjct:    1 MNIHEYQAKRLLHEYGAPIANGVAVYSIEQAEKWAKKL--PGPLYVVKSQIHAGGRGKGKFKELDLDSKGGVRLAKSVEEVVANVKEMLGKTLVTKQTGPEGKQVNRLYIEDGADIERELYLSLLVDRAVGRVAFVVSMEGGMDIETVAEETPEKILTLPVDPVQGVTSADCKRLCDAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_PARDP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.089e-28
Identity = 73/179 (40.78%), Postives = 105/179 (58.66%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 844
            +NIHEYQ   L+ +YG  V  G  V   DE K A  ++  D    VVK+QI AGGRG G FK   +G KGGV + K  EE E+LA +MLG+ LVT QTG  GK V+++Y+ +   +  E+Y A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L
Sbjct:    1 MNIHEYQAKALLRQYGAPVSDGRVVMKADEAKAAAGEL--DGPLWVVKAQIHAGGRGKGHFKEKEAGEKGGVRLAKSVEEAEELARQMLGRTLVTHQTGETGKQVNRIYIEDGSDIERELYLALLVDRGTSRVSFVASTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFAL 177          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_MESSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=sucC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.953e-28
Identity = 72/175 (41.14%), Postives = 105/175 (60.00%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKV 832
            +NIHEYQ  EL+  YG  V +G+A+ +  E + A + +       VVKSQI AGGRG G FK      KGGV + K  EEV   A +MLG  LVTKQTGP+GK V+++Y+ +   +  E+Y +I++DR    P  +  ++GG  IE +AE+ P  I+ + I    G+T++D  K+
Sbjct:    1 MNIHEYQAKELLRGYGAPVAQGVAIFTSGEAEAAAKKL--PGPLYVVKSQIHAGGRGKGKFKELSPDAKGGVRLAKSIEEVVANAKEMLGNTLVTKQTGPEGKQVNRLYIEDGADIARELYLSILIDRTVGRPAFVVSTEGGMDIEAVAEETPEKILTLAIAPERGVTNDDVTKL 173          
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_HERAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Herminiimonas arsenicoxydans GN=sucC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.953e-28
Identity = 71/169 (42.01%), Postives = 100/169 (59.17%), Query Frame = 2
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDA 823
            +NIHEYQG E++ KYG+  PKG    SVDE  +A + +    K  VVK+QI AGGRG G       GGV + K  +EV   A  +LG  LVT QTGP+G++V ++ + E   +  E+Y  +++DR +    ++  S+GG  IE +AE  P  I KV ID F G+ D +A
Sbjct:    1 MNIHEYQGKEILRKYGVTTPKGFPCFSVDEAVQAAEKL--GGKVWVVKAQIHAGGRGKG-------GGVKVAKSLDEVRKYANDILGMTLVTHQTGPEGRLVKRLLIEEGADIKKELYVGMVVDRGSQRVALMASSEGGMDIEHVAEHTPEKIHKVFIDPFKGLLDSEA 160          
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_CHLL21.227e-2840.36Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PELLD2.093e-2839.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NAUPA2.093e-2840.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLPB2.093e-2839.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB2_CAEEL2.093e-2839.13Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCC_CHLTE2.733e-2839.88Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARQU4.662e-2839.11Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PARDP6.089e-2840.78Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MESSB7.953e-2841.14Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HERAR7.953e-2842.01Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
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