CF832370

Overview
NameCF832370
Unique NameCF832370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_YERPS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pseudotuberculosis GN=sucC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTG 154
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_YERPP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pestis (strain Pestoides F) GN=sucC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTG 154
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_YERPN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=sucC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTG 154
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_YERPG (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pestis bv. Antiqua (strain Angola) GN=sucC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTG 154
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_YERPE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pestis GN=sucC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTG 154
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_YERPB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=sucC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTG 154
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_YERPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=sucC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTG 154
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_YERP3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=sucC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTG 154
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_YERE8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=sucC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG 805
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I KV +D   G
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDVHGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKVALDPLTG 154
[Close]
BLAST of CF832370 vs. ExPASy Swiss-Prot
Match: SUCC_THIDA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Thiobacillus denitrificans (strain ATCC 25259) GN=sucC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 53/166 (31.93%), Postives = 87/166 (52.41%), Query Frame = 2 
Query:  320 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITD 814
            +N+HEYQ  +++    +N P+G+A  S D    A +++    +  VVK+QI AGGRG         GGV +V   + V  +A  +LG+ LVT Q  P G+ V  V + E L +  E+Y ++++DR +    ++  + GG  IE +A   P  ++    D   G+ D
Sbjct:    1 MNLHEYQAKQVLRSSNLNTPRGIAATSADAAADAAREL--GGEAWVVKAQIHAGGRGKA-------GGVKVVTSIDAVRSVAAALLGKPLVTVQNAPDGQPVHTVLVEETLPIARELYLSLLVDRASERVAVVASAAGGMDIEQVAHATPEKVLTEICDPLLGVQD 157
The following BLAST results are available for this feature:
BLAST of CF832370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_YERPS7.461e-1833.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPP7.461e-1833.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPN7.461e-1833.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPG7.461e-1833.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPE7.461e-1833.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPB7.461e-1833.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPA7.461e-1833.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERP37.461e-1833.13Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERE87.461e-1833.74Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_THIDA7.461e-1831.93Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832370 ID=CF832370; Name=CF832370; organism=Citrus sinensis; type=EST; length=848bp
GCCCATTGAGGGGGTATATTTGCATAAAATTGTGAGATAGGGGGGGTGAA
AAAACGAACTATAGAAAATAGGAAGAATCTCTGGTTCTCTACCGTCTAGG
GTCAATTCTGTCACACTCTTCTTCGTCTGACTTTGATCGCATTCGCATCA
GTAAGCAGCCGCGACAAATTCCCTTTTTTCTCTTCATTGTTAGGGTTTCA
CGTACATCTATCCAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGA
TTGTTAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCA
GCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGGGGGCTGAGT
TGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCT
GTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGATCATAAGGA
GCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTT
TTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAAGAAGAAGTT
GAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAAC
TGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGT
CACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCT
GGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCT
TGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCA
ATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCGC
back to top